Algoriphagus sp. NBT04N3: GYM62_12695
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Entry
GYM62_12695 CDS
T09623
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM62_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
algo03019
]
GYM62_12695
Enzymes [BR:
algo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYM62_12695
Messenger RNA biogenesis [BR:
algo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM62_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
SWI2_SNF2
CMS1
Flavi_DEAD
Utp25_C
P-loop_SecA
ERCC3_RAD25_C
CSN1_C
Motif
Other DBs
NCBI-ProteinID:
QYH39596
LinkDB
All DBs
Position
complement(2939906..2941111)
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AA seq
401 aa
AA seq
DB search
MNPNNRPKPNRDKSRNARPVGRTSPKQGKQAKVSKLDPRLLVKTASPSSKTDFKSETTFS
DLPIGAQLKKNLTLKGYTTLTKIQDQSLLPLLEKRDLMGISNTGSGKTCAFLIPIIEHAL
ANPHDFKALIVTPTRELALQIEEEFKSLTKGMNLRSATFIGGTNINSDEKSLHRHPQIIV
GTPGRLLDLYGRRLLKLNMVKTLVLDEFDRMLDMGFVNDVKKLVAPMNQRSQTMLFSATL
DPDQSVLIKSLLNNPVEVKVNSGGNSSENVDQEIVHLKDGQDKFTVLQNMFQSAELERVI
IFTETKRLADRLSKKLNQAGIQSGLIHGNKSQNFRNRTIEEFKNGTTRVLVATDVAARGI
DVADVTHVINYQLPMSMDSYIHRIGRTGRAGKAGRAITFVN
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgaataacagaccaaaaccaaatagggacaagagcagaaatgcacgtcccgtc
ggtagaacatcgcctaaacaaggcaagcaggccaaagtgtccaaattggatccaaggcta
ttggtgaagacagcttcaccgagcagtaaaacagattttaaatctgaaaccactttctct
gatctacctatcggtgctcagttgaagaaaaacctgaccttgaaagggtatacaaccttg
acaaaaattcaggatcagtctctacttccacttttggaaaaaagagatttgatgggaata
tctaatacagggtcaggtaaaacctgcgctttcttaatacctatcattgagcatgcttta
gcaaaccctcatgatttcaaggcattgatcgtgactccgactagagagttggcgcttcag
attgaggaagagtttaagagcctgaccaaaggcatgaatttgagatctgccaccttcatt
ggaggcacaaatattaattctgacgaaaaatccttgcatagacatccgcagattattgtg
ggtactcctggaagattgttggatttatatggtagaagattactcaaactcaacatggtc
aaaacactcgtcttggatgagtttgacagaatgttggatatgggtttcgtaaacgatgtg
aagaagttggtagcgcctatgaatcaaaggagccagactatgcttttcagtgcgacgcta
gacccggatcaatcagtattgatcaaaagccttttgaataatccagttgaagtaaaagta
aatagtggaggcaactccagcgagaatgtagatcaggagattgtccatttgaaagatggt
caagataagtttactgttttgcaaaatatgtttcaaagtgcagagttggagcgggtgatc
attttcaccgaaaccaaaagattggctgatagactgagtaaaaaattaaatcaggcaggg
attcaatccggtctgatccacggcaataaatcccagaacttccgcaataggactattgag
gaattcaaaaacggaaccaccagagtattggtagccaccgacgtggcggccagaggtata
gacgtggctgatgtgacccatgtgatcaattatcagcttcccatgtctatggatagttat
atccacagaataggccggacagggcgcgccggaaaagccggtcgtgccatcacatttgtc
aactaa
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