Algoriphagus sp. NBT04N3: GYM62_14240
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Entry
GYM62_14240 CDS
T09623
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GYM62_14240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
algo03021
]
GYM62_14240 (rpoC)
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_14240 (rpoC)
Enzymes [BR:
algo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GYM62_14240 (rpoC)
Transcription machinery [BR:
algo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GYM62_14240 (rpoC)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GYM62_14240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QYH39888
LinkDB
All DBs
Position
complement(3277551..3281861)
Genome browser
AA seq
1436 aa
AA seq
DB search
MAFRKNKKLNNDFSRVTISLASPESILDSSNGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIVYYERYAVVQPGIKAEDGIQYLDFLTEDEYLDIMDKLPKENHMLDD
DDPNKFIAKMGAEALEMLLARLDLDDLSYSLRHQAATDTSQQRKAEALKRLKVVEAFRDA
RTRIENRPEWMVVRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAILEASTLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGKKSTPEEPVP
GEGMTFYSQEEVIIALNEGQISKHANIKCKVPVRGEDGEITSQIIDTVAGRLIFNQFVPA
EVGYVNELLTKKKLQQIIAQVVKVCGIARTAQFLDDIKHLGFQMAYQGGLSMGLNDVIIP
EEKEPMIAKAKEEVDQVWNNYLMGLITDNERYNQVIDIWTRTNSHLTNNLMKKMEEDKQG
FNAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDMIVTEEDCGTLRGLVVQPLKDNDEI
VEPLSERILGRVSVHDVYDPLTDELIVPAGVEIDDEIAKRVDESAVEEVEIRSVLTCETR
RGVCSKCYGRNLATGNMVQAGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNMAVEASIN
AKFEGVVEFDEELRLIETTNKDGEPVTVVMGRSGEIKINDVKSGKTLVSNHVPYGALLNV
KDGQKIAKGDSLCTWDPYNAVILSEFDGKVDFESIVEGVTYKEVADDQTGFREKVIIDTK
DRTKNPAIIVDYGEDSKAYNIPVGAHLAVEIGDKVKAGQVLVKIPRSVGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVTYGGIKRGNREIIIESKDGVIKKYMVSLSKHILVQEN
DFIRAGEPLSDGAITPNDILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEVIVSQMM
QKVEILDAGDTGFLQGQVVDKWAFREENDNILDKKVVMDAGDSSTLKPGMIISSRRLRDE
NSSLKRKDLKLVQVRDAETAVSAPTLQGITAASLGTESFISAASFQETTKVLSEAAIRGK
RDELLGLKENVIVGHLIPAGTGQRRLQNLIVGSQEEYDKLSENMEKSTRRSSEAIL
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagaaaaaacaaaaaactaaacaatgacttttcgagagtcaccatcagtttg
gcttccccggaatctattctggatagttcaaatggagaggtgacccagccagagactatc
aattacagaacttacaagccagaaatgggtggtctgttctgtgagagaatctttggtcca
gtgaaagactgggagtgtcattgtggtaaatacaagcgcatcagatataaaggcatcatc
tgcgaccgttgtggggtagaggtgactgaaaagaaagtacgtcgtgagcgaatgggtcac
attgagttagtggttcctgttgcacacatctggtacttcaaatctttgcctaacaagatt
ggttacttgttgggtcttcctaccaaaaagttggaccaaatcgtttattatgagcgatat
gcagttgttcagccaggtataaaagctgaggatggaatccaatacctagacttcttaact
gaagatgagtatttggatatcatggataagcttcctaaggaaaatcatatgctagatgat
gacgatccaaataaattcatcgccaaaatgggtgctgaggctttggaaatgttgttggct
agattggacttggatgatctttcttattctcttcgtcaccaagcagctacagatacctct
cagcagcgtaaggcagaagccttgaagcgtttgaaggtagtagaagcattccgtgatgca
agaactagaatcgaaaaccgtcctgagtggatggtggtaagaatggttcctgtgattcca
ccggaattgcgtccattggtgccattggatggcggtagattcgctacttctgacttgaat
gacttgtacagaagagtaatcatcagaaacaaccgtctgaagagattgatagacatcaaa
gctccagaagtaatcttgagaaacgaaaagcgtatgttgcaggaagctgtggattctctt
ttcgataactccagaaaagtaaatgcggtaagatctgatggaaacagagcattgaaatcc
ctttctgatatgttgaaaggtaagcaaggtcgtttccgtcaaaacttgctcggtaagcgt
gtggattactccggtcgttctgtgatcgtagtaggaccagaattgaagcttcacgagtgc
ggtcttcctaaaaatatggcagctgagcttttcaaaccttttattatcagaaagctgatc
gaaagaggtattgtgaagacagtaaaatcagccaagaaaattgtggatcgtaaagatcca
gtggtttgggatattttggaaaacgtattgaaaggacaccctgttcttttgaaccgtgcc
ccaactcttcacagattgggtattcaggcattccagccaaaattgatcgaaggaaaagcg
attcagttgcacccattagtgtgtacagcattcaacgctgactttgacggtgaccaaatg
gcggttcacgttccactgggacatgaagctatcttggaagcctctacattaatgctttcc
tctcataatatcttgaaccctgccaacggagcaccgattacggtaccttctcaagacatg
gttttgggtctgtattatgtaaccaaaggcaaaaagtctactcctgaagagccagttcct
ggtgaaggaatgactttctacagccaagaggaagtaattattgctttgaatgaaggacag
atttccaagcatgcgaacatcaagtgtaaagtacctgtaagaggtgaggatggggaaatt
accagccaaatcatcgatacagttgcaggacgtttgatcttcaaccagtttgttccggct
gaggtaggatatgtaaacgagcttttgactaagaaaaagcttcagcagattatcgctcaa
gtagtgaaagtttgtggtattgcacgtactgcccagttcttggatgatatcaagcatcta
ggattccagatggcttaccaaggtggtttgtcaatgggtcttaacgatgtaatcatccct
gaggaaaaagagccaatgatcgccaaagcgaaagaagaggtagatcaggtttggaataac
tacttgatgggtctgatcacagacaacgaaagatataaccaagtaattgatatttggact
cgtaccaactctcatttgactaataatctaatgaagaagatggaggaggacaagcaagga
ttcaatgctatctacatgatgatgcactctggagctagaggttcaagagagcaaattcgt
cagctgggtggtatgagaggtctgatggctaagcctcagaaaaacttacaaggttcagta
ggtgaaatcatcgaaaaccctatcctttccaactttaaggaaggtttggacgtactcgag
tattttatctccactcacggtgcacgtaagggtcttgcggatacagctttgaaaactgcc
gatgcgggttatttgactcgtcgtttggtagacgtagctcaagacatgatcgtcactgaa
gaggattgcggtactttgagaggtttggttgttcagccattgaaagacaacgacgaaatc
gttgagccactttctgaaagaatcttgggtagagtatcagttcatgatgtttacgaccca
ctaacagacgaattgatcgttccggcaggagttgaaatcgacgacgaaattgcgaagaga
gtagatgaatcagctgttgaagaggttgagataagatctgtcttgacttgcgaaaccaga
agaggggtttgttctaaatgctatggacgtaaccttgctaccggtaatatggtacaggca
ggtgagtcagtaggagttattgcagcgcagtctatcggtgaaccaggtacacagttgacg
ctaagaacattccacgtagggggtactgcttccaacatggctgtagaggcgagcatcaat
gctaaattcgaaggtgttgtagaattcgatgaggaattaagactaatcgaaactaccaat
aaagacggtgaaccagttacagttgtaatgggtagatccggagaaataaaaatcaatgat
gtgaaatccggtaagactttggtttcaaaccacgtgccttacggagcattattgaacgtg
aaagatggtcagaaaatcgccaaaggtgattctctatgtacttgggatccatacaacgcc
gtaattctttctgaattcgacggtaaagtagactttgagtctattgtagagggtgttact
tacaaagaagttgccgatgatcagactggtttccgtgagaaagtaattatcgatactaaa
gacagaaccaagaaccctgcaattattgtagactacggagaggattccaaagcatacaat
attccagtgggagctcacttggctgttgaaattggagataaggtgaaggctggacaggta
ttagtgaaaatcccaagatccgtaggtaagacaagagatattaccggtggtcttccaaga
gtaactgaattgtttgaggcacgtaacccatccaacccggctgtggtttctgaaatcgac
ggtgtggtaacttacggcggaatcaagagaggtaacagagaaattatcatcgagtctaag
gatggggtgattaagaagtacatggtatctctttccaagcatatcttggttcaggaaaat
gacttcatccgtgcgggtgagccattgtcagatggagcaattactccaaatgatatccta
tccattaaaggaccaactgccgttcaggagtatttggtaaatgaaattcaggaagtttac
agacttcagggtgtgaaaatcaacgataagcacattgaggtgattgtatctcaaatgatg
cagaaagttgaaattcttgatgctggagatactggattcttgcaaggacaggtagtagat
aagtgggctttccgtgaggaaaatgacaatatcctagataagaaagtggtgatggatgct
ggagactctagcactttgaagccaggtatgattatttcttcaagaagactgagagatgaa
aactccagcttgaagcgtaaagacctgaaattggtacaggtgagagatgctgaaactgcg
gtttctgctcctacacttcaaggtatcacagcagcttctttgggtacagaatcatttatt
tcagcagcttccttccaggaaactaccaaagtactttctgaagcagctatcagaggtaag
agagatgagctactcggattgaaagaaaacgtgatcgtaggtcacctaattccggccggt
acaggtcagagaaggttgcaaaacttgatcgttggatctcaggaagagtatgataagctt
tctgaaaatatggaaaaatccactcgcagatctagcgaagcgattttataa
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