Algoriphagus sp. NBT04N3: GYM62_16130
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Entry
GYM62_16130 CDS
T09623
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM62_16130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
algo03021
]
GYM62_16130
03019 Messenger RNA biogenesis [BR:
algo03019
]
GYM62_16130
Transcription machinery [BR:
algo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GYM62_16130
Messenger RNA biogenesis [BR:
algo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GYM62_16130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
Mor
OB_RNB
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QYH40244
LinkDB
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Position
3686212..3687990
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AA seq
592 aa
AA seq
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MYNIEELRIRLLSELKEIAEELGVKNHKSLKKDELVYAILDQQAITPEQALPKKKPSLAE
AQEPAASQPEEKKSGKPESKEEPEFKPKFRRQNVTEIQAEEDSKKEEKAEKPKHNPEPRP
KKEAEPAKAEKKETQDKAVEEKENKTFRPRRKVFEEVNVSEDTETEEKPKAQEQKQREPR
PEQEVELPKRKNFKSQDEVMAPAAETSPQGSRKKTFVNPREFDGVIENEGVLEMMQEGYG
FLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDHIKGSIRPPKEGEKYFALLKIGTVNGKT
TDEIRDRVPFEYLTPLFPEERLNLSTKSDGYSTRILDLFAPIGKGQRGMIVAQPKTGKTV
LLQQIANAITQNHPEVHLMILLIDERPEEVTDMARSVRAEVISSTFDETADRHVKVSNIV
LEKAKRMVEVGHDVVILLDSITRLARAHNTVVPSSGKILSGGVDANALHKPKRFFGAARN
VENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELALDRKLANRRIYPAIDVLSSGTR
REDLLMDREEMQRVWILRKLMSDMTSQESMEFLLQRMKGTRDNAEFLISMNG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatagaagaactcagaatcaggcttttatctgaactgaaggagatcgctgaa
gagttaggtgttaaaaaccacaaatcactcaaaaaagacgaattagtctacgccattttg
gatcaacaagcaatcaccccagagcaagccctccctaagaaaaagccctccctcgcagaa
gctcaagagcctgcagcttcccaaccagaagaaaaaaagtctggaaagcctgaaagcaaa
gaggaacctgaattcaagcctaagtttagaagacagaacgtaacagaaattcaggcagaa
gaagactcaaaaaaggaagaaaaagctgaaaagccaaaacacaatccagagccaaggccg
aaaaaggaagcagagcctgcaaaagctgaaaagaaagaaactcaggataaggctgttgag
gaaaaagaaaacaagacttttcgtccgagaagaaaggtttttgaagaagtaaatgtctcc
gaagacacggaaactgaggaaaaaccgaaggcgcaggagcaaaaacagcgagaaccaagg
cctgaacaggaagtggaacttccaaaaagaaaaaacttcaagtctcaggatgaagtaatg
gcacctgcggcagaaaccagtcctcaaggctctagaaaaaagacctttgtcaatccgcgt
gaatttgatggagttattgaaaatgagggggttttggaaatgatgcaggaaggatatggt
ttccttcgctctttagattataattacttggcgtctccagatgatatctatgtatctcca
agtcaaatcaaactttttggcctgaagaccggagatcatatcaaaggatccatcagacct
cccaaagaaggagagaaatattttgctttacttaaaataggaactgttaacggtaaaacc
acggatgaaatccgagacagagttccattcgaatatcttaccccattattcccagaggaa
agattaaatctatccaccaaatctgacggctattccaccagaattttggatttgtttgct
cctattggaaaaggacaaagagggatgattgtagctcaacctaaaactggtaagacggtt
ttattacagcaaatagccaacgctatcacacaaaaccatcctgaagttcacctgatgatc
ttattgattgacgagcgtcctgaagaggtaactgatatggctaggtctgtgcgtgctgaa
gtgatttcctccacatttgatgagaccgcagacaggcacgtgaaagtatccaatatcgtt
ttggaaaaagccaagagaatggtggaagttggacacgatgtagtaattctattggattca
atcaccagattagccagagcacacaatacagttgttccaagttcaggaaagatcctttcc
ggtggtgtggatgcgaatgcattgcacaaaccaaagagattctttggtgctgcaagaaat
gttgagaacggaggttctttaactatcattgcgaccgctcttgtggagacaggttctaag
atggatgaggtaatatttgaggaattcaaaggtaccggtaatatggagttggccttggat
cgtaagcttgccaatcgaagaatttatccggctattgatgtacttagctcaggtacgaga
cgagaggacttattgatggatagagaagaaatgcaaagagtttggattttgagaaaactg
atgagcgatatgacctctcaggagtcaatggaattcttgcttcagcgtatgaaaggtacc
cgtgacaatgctgagtttttgatcagtatgaatggctaa
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