KEGG   Algoriphagus sp. NBT04N3: GYM62_16715
Entry
GYM62_16715       CDS       T09623                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
algo  Algoriphagus sp. NBT04N3
Pathway
algo03030  DNA replication
algo03430  Mismatch repair
algo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:algo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GYM62_16715
   03430 Mismatch repair
    GYM62_16715
   03440 Homologous recombination
    GYM62_16715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:algo03032]
    GYM62_16715
   03400 DNA repair and recombination proteins [BR:algo03400]
    GYM62_16715
Enzymes [BR:algo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     GYM62_16715
DNA replication proteins [BR:algo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     GYM62_16715
DNA repair and recombination proteins [BR:algo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     GYM62_16715
SSDB
Motif
Pfam: RNase_T DEDDh_C DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: QYH40356
LinkDB
Position
3858239..3858910
AA seq 223 aa
MSWWPFGRKKEEQPPWLKAYLTEAKKSIPGIRKIQQLSFVVLDTEATGFDSKKDELLSCG
IIGIEEEKIKISSSKEWQFASEKSPGKSATIHGLIHPKNPIELKTFCQELLGNLRGSIIV
GHHIGFDLDLLCKTFQPFGFNQFPNPKIDTMNLAVRLDFGPQVDWNRVRKEDYSLDALCE
KFNIPKEDRHTAGGDAFLTAQILLKLLKQAEKKGILTYQELFR
NT seq 672 nt   +upstreamnt  +downstreamnt
atgagttggtggccttttggaagaaaaaaagaggagcagcctccttggcttaaggcttat
ttaacggaggcgaagaagtctattcccggaatccgaaaaatccagcagttgagctttgta
gtcttggatactgaggccactggttttgattctaagaaagatgaattattatcctgcggt
atcatagggattgaagaggaaaaaatcaaaatcagcagttccaaagaatggcaatttgca
tctgagaaatctcctggaaaatctgcaacaatacatggcttgattcatcccaaaaatcca
attgagctaaaaaccttttgtcaggagctactgggtaatctgcgaggatccattatcgta
ggccatcatattggatttgatttggaccttctatgcaagacttttcaaccctttggattt
aatcaattccctaatccaaaaattgacacgatgaatttggctgtgcgtttggattttggc
ccccaagtagactggaatagggttaggaaagaagattacagcctggatgctttgtgcgag
aagttcaacatccccaaagaagaccggcatactgctggaggtgatgcatttctgaccgct
caaatattattgaagttattaaagcaggccgagaaaaaggggattcttacgtatcaggag
ttatttcgctga

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