Algoriphagus sp. NBT04N3: GYM62_17015
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Entry
GYM62_17015 CDS
T09623
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03030
DNA replication
algo03410
Base excision repair
algo03420
Nucleotide excision repair
algo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYM62_17015 (polA)
03410 Base excision repair
GYM62_17015 (polA)
03420 Nucleotide excision repair
GYM62_17015 (polA)
03440 Homologous recombination
GYM62_17015 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
algo03032
]
GYM62_17015 (polA)
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_17015 (polA)
Enzymes [BR:
algo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GYM62_17015 (polA)
DNA replication proteins [BR:
algo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GYM62_17015 (polA)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GYM62_17015 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYM62_17015 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
DUF3913
DNA_pol_lambd_f
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
QYH40414
LinkDB
All DBs
Position
3919580..3922402
Genome browser
AA seq
940 aa
AA seq
DB search
MSQNQPHKLFLLDAMALIYRAHFAFSKNPRINSKGLNTGVMLGFTNTLMEVLTKEKPSHI
AVAFDTSAPTFRHEQFEPYKANRQEQPEDITVSIPWVKEIVKAFRIPVLEMDGFEADDII
GTLAKKAERESFTVYMMTPDKDYGQIVDDHIYLYKPAFMGNGVDVMGPKEVCAKWDIEHV
DQVRDILGLMGDAVDNIPGIPGIGAKTATKLLKEFGTVEELIKNTDKLKGKQKENVENFA
QQGILSKELATIKIDVPIAFNEEDLRYDGFDEEKLRAIFNELEFRTLSNRIFKDEGKKAV
IQKNEQLGLFGEAPSSSPASEIEFEEESVNTSAPVVPDTIHSNLHHYHKIKGKDAIEELM
EYLMVQKVVCFDTETTALNAMEAELVGISFAYLSGEAYYIPCPADQKETQAILELLMPFF
ENEDILKVGQNIKYDLLVLKNYGIEVKGALYDTMLAHYLIEPEGKHSMDWLAEQYLNYKP
VSITELIGKKGKNQGNMRDVDEDEVTSYAAEDADITLRLKEKFDPLLKENELEKLFYEVE
NPLINVLTDMEFEGVKIDTDSLAELSQALEEESIAIEKRVYELAGVRFNLASPKQLGDVL
FEKLKLDPKAKKTKTGQYATGEEILSKLADEHEIAQAILDYRQMVKLKSTYVDALPTMIN
SKTGRIHTTYNQFVAATGRLSSINPNLQNIPIRTERGREIRKAFVARDENHVLLAADYSQ
IELRIMAAFSGDESMIEAFKNGRDIHATTAAKIFQVPLEEVSSDMRRKAKTANFGIIYGI
SAFGLSQRLSIPRGEAKEIIDAYFKEFPAVKEYMDGAIEKARKDEYVETILGRRRYLRDI
NSRNQTMRGFAERNAINAPIQGSAADLIKVAMIDVHNWMKKEKLKSKMILQVHDELVFDA
HKDEVEILKKNIPGLMSNAIKLAVPVEVEVGLGKDWLEAH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaatcaaccccataaattatttcttctagatgccatggctctgatctatcgg
gcacattttgcatttagtaaaaatcctcgaatcaactccaaaggccttaacaccggtgtc
atgcttggttttaccaatacgctgatggaagtgttaaccaaagaaaagcccagtcatatt
gcggtagcttttgatacttctgcgcctacttttagacatgagcagtttgagccttacaaa
gcaaatagacaagaacaaccagaagacattactgtatctattccatgggttaaggaaatt
gttaaagcattccggattccagttttggaaatggatggattcgaagccgatgatatcatc
gggaccttggcaaaaaaagcagaaagggaatcatttacggtctacatgatgacgccggat
aaggattatggacagatcgtggatgaccatatttatttatacaaacctgccttcatgggc
aacggagttgatgtgatgggcccgaaggaagtttgtgccaaatgggatattgagcatgtg
gatcaggtaagagatatcctgggactgatgggtgatgcggtagataatattccgggtatt
ccaggcattggcgctaagactgcaaccaagctattgaaggagtttggaacagtggaagaa
ctgattaaaaacacggataagctgaaaggaaagcaaaaggaaaatgtggaaaactttgcg
cagcaaggtatactttccaaagagcttgccaccatcaaaatagatgtgcctatcgcattt
aatgaggaggacttacgttacgatggctttgatgaagaaaagctcagggctatttttaac
gagttggaattccgtactctttccaatagaatttttaaagacgaagggaaaaaagcagtt
attcagaaaaatgaacaacttggtctttttggggaagctccaagttcatctccagcttcg
gagattgagtttgaggaagaatctgtaaatacctccgctccggttgttccagatactatc
cacagcaatcttcaccattatcacaaaatcaaaggaaaagatgccatcgaagaattgatg
gagtatttgatggtacaaaaagttgtatgctttgatacggaaaccactgcgctcaatgca
atggaagcagagttggttgggatttcatttgcctacctcagtggtgaggcctactatatt
ccttgccctgctgatcaaaaagaaacgcaggctattttggagctgttaatgcctttcttc
gaaaatgaagatatcctcaaagttggtcagaatatcaagtatgacctgttggttttgaaa
aactatgggatagaagtgaaaggtgcactttatgacaccatgttggcgcactaccttatt
gaacctgaaggcaaacacagcatggattggctcgctgagcaatacctcaactataagcct
gtttccattactgaattgatcggaaaaaaaggtaaaaatcagggcaatatgcgggatgtg
gacgaagatgaagtcacctcttatgccgcagaagatgctgatattacactcagattgaaa
gagaagtttgatccccttttgaaagaaaatgaattggaaaaacttttctacgaagtagaa
aacccgctgatcaatgtgctgacagacatggagtttgaaggggtcaaaatagacactgac
agcctagccgaactttctcaagccctagaggaagaaagtattgctatagaaaaaagagtc
tatgaattagcaggagtcagattcaatctagcttcaccaaagcaattgggtgatgtgctt
tttgaaaagttgaaactggaccccaaggctaaaaagaccaaaacagggcaatacgccact
ggagaggagatcttgagcaaattggcagatgagcacgagattgctcaggccattttggat
tatagacaaatggtgaagctaaagtcaacgtacgtggacgctttacctaccatgattaac
tccaagaccggacgcattcataccacctataatcagtttgttgcggctacaggtcgtttg
tcctccatcaaccccaatttgcagaatattcctattcgaacagaaagaggaagggagata
agaaaggcctttgtagccagagatgaaaatcatgtgctcttggcagcggattattctcaa
atagaactgagaatcatggctgctttctccggagatgagtccatgatagaggcattcaaa
aatggcagagatattcatgccaccactgccgcaaaaatattccaggttccactggaagaa
gtcagctccgacatgaggagaaaggccaaaactgccaactttggaatcatctatggaatt
tcagcttttggactttctcagcggctttctatcccaagaggagaggccaaagaaattatt
gacgcttatttcaaagagtttcctgctgtaaaagaatacatggacggagctatagaaaag
gccagaaaagacgagtacgttgagactatcttgggtagaagaaggtacttgagagatatc
aatagccgaaaccaaactatgcgaggtttcgctgaacgaaacgcaatcaatgctcctatt
cagggttcggctgcagacttgatcaaagtggctatgatcgatgtgcataactggatgaaa
aaagaaaagctgaagtccaaaatgatcctgcaagttcacgatgaattggtttttgacgct
cataaggatgaagttgagatattgaagaaaaatattcctggcttgatgtcaaatgctatc
aaactagctgtaccggtggaagtggaagtgggattaggaaaagactggttagaggctcat
taa
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