Algoriphagus sp. NBT04N3: GYM62_18045
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Entry
GYM62_18045 CDS
T09623
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03410
Base excision repair
algo03430
Mismatch repair
algo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GYM62_18045 (recJ)
03430 Mismatch repair
GYM62_18045 (recJ)
03440 Homologous recombination
GYM62_18045 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_18045 (recJ)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GYM62_18045 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GYM62_18045 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GYM62_18045 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QYH40604
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Position
4151515..4153239
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AA seq
574 aa
AA seq
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MEYVWKQKPKASQSTIEKLGKEINVNPILSNMLINRGVESFDQAKDYFRPSLSQLHDPFL
MQDMHQAVTRIEKAIANQEKILVYGDYDVDGTTAVALVYSFLKGFYPLVDFYIPDRYKEG
YGISERGVRYAAENDFALVIALDCGIKAIDKVNLASQLDVDFIICDHHTPGEELPKAIAV
LDAKREDCNYPYKELSGCGVGFKLIQAIAKSRGMDESNLYAYLDLLVVSIAADIVPITGE
NRILAYYGLDRINNTPRAGLKALILRSKIEKEIGISDIVFKIGPRINASGRLEHAKASVE
LLISTDLEEAIERAKVVDEVNATRRNFDENITREAFEMIAEREEQAEWNSTVLFKEDWHK
GVIGIVASRCIEKYYRPTIILTESNAKATGSARSVVDFDIYEAIAECSDLLDQFGGHKYA
AGLTLSVDNVPAFQAKFEQVVKSRIEEVHRKPVIEVDDELLLDQINYKFHNILKQMAPFG
PGNTEPVFRISNVYAEDVAVLKDKHLRFKIVQDGQLTTPVCLGFGMADRAKDPDLTTVNM
LRGRMRFDIVAELRENFFRDKSSLQLYVKDIKFD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgtctggaaacaaaaacccaaagcctcacaaagcacaattgaaaaactgggg
aaagagattaatgtcaatcccattttatcaaatatgctgatcaatagaggggtggagtct
tttgatcaggcaaaagattacttccgccccagcttgagccagctgcatgatccatttttg
atgcaggatatgcatcaggcagttacccgaattgaaaaagcgattgccaatcaggaaaag
attctggtgtatggggattacgatgtggacgggactacggcagtggctttggtttacagc
tttttgaaaggcttttatcctttggtggatttttacattccggatagatacaaagagggc
tatggtatcagtgaaagaggagtccgctatgccgccgagaatgactttgctttggtaatt
gccttggattgcgggatcaaggccatagacaaggtcaatttagcttcccagctcgatgtg
gactttatcatttgcgatcatcatactccgggcgaggagctacctaaagctattgctgtt
cttgatgcaaaaagagaggactgcaattatccatataaagagctcagtggctgtggcgtt
ggctttaaactgattcaagccattgcaaaaagcaggggaatggatgagtctaacctgtat
gcttacttggatcttttggtagtaagtatagcagcggacattgtgcctattacgggagaa
aatagaattcttgcctattacggcctagatagaattaataataccccaagggctggactg
aaagctttgattttgcgaagcaaaatcgaaaaggaaatagggatctcggatatagtcttt
aaaatcggaccaagaatcaatgcttctggaagattagaacatgccaaagcttcagtagaa
ttgctaatctctactgatttggaggaggcaattgagcgagctaaagtagtggatgaggtc
aatgcaactagaaggaattttgatgaaaatattactcgggaagcctttgaaatgatcgcc
gaaagagaagaacaggcggagtggaattcaacagttcttttcaaggaagattggcacaaa
ggagttatcgggattgtagcgagtcgttgcattgaaaaatattatcggccaaccattatc
ctgaccgaatccaatgccaaagctacaggaagcgcacgttcggtggtggattttgatatt
tatgaagctatcgctgaatgctcggatttattggatcaatttgggggacataaatatgcg
gcgggattgaccctttctgtggataatgtaccagcttttcaggcgaagttcgagcaggta
gtcaagagccggattgaagaggttcatcgcaagcccgtaattgaagtagacgatgagctt
ttactcgatcagatcaattataaatttcataatattctaaagcaaatggctccttttggc
cccggaaacaccgagccagtatttagaatatccaatgtatatgcagaagatgtggcggtt
ctaaaagacaaacaccttcgctttaaaattgtccaagatggccaactcacgactcccgtt
tgtttgggttttggaatggctgaccgagcaaaagatccggatttaaccacagtaaatatg
cttaggggaagaatgcggtttgatatagttgccgagttgagagagaattttttcagagat
aagagtagcttgcagctttatgtgaaggatatcaaatttgattga
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