Algoriphagus sp. NBT04N3: GYM62_18880
Help
Entry
GYM62_18880 CDS
T09623
Name
(GenBank) bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo00300
Lysine biosynthesis
algo00470
D-Amino acid metabolism
algo00550
Peptidoglycan biosynthesis
algo01100
Metabolic pathways
algo01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GYM62_18880
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GYM62_18880
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
GYM62_18880
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
GYM62_18880
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
algo01011
]
GYM62_18880
Enzymes [BR:
algo01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
GYM62_18880
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
GYM62_18880
Peptidoglycan biosynthesis and degradation proteins [BR:
algo01011
]
Precursor biosynthesis
Amino acid ligase
GYM62_18880
Racemase
GYM62_18880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
QYH40761
LinkDB
All DBs
Position
complement(4332501..4334960)
Genome browser
AA seq
819 aa
AA seq
DB search
MMNALTPEQIASITGGKLLGKNLSLELTRVSIDSRQILNPTQTLFVALKGAKADGAKFIP
QLIEEGVQVFLVSESFQIQNKETCYIAVKDTRKALQSLAKYQRELFEKPVVSITGSNGKT
IVKEWLGQILSQNYAVAKSPKSYNSQVGLPLSVFEIQPYHQVAILEVGVSKKGEMEALQA
IAQPNLGVFTNIGTAHDEGFESREEKIKEKLQLFKDSALLVYNKDQKELSKIIETAIENE
RLIAWSDQPGADYTRAIKFQDELTKIILIKSDLSTFTFYTRFSDQASLENLTHTIVSALS
LGMLSDSIQKGINLLRQVDMRLTLKPGINDSLIIDDTYNNDLAGLRVSLDFMRQQRPKRR
KILFLSEFQQQGQPEKIYPEVAELINSHSLDLVVAVGENIHPLQELIQSEFKAFASTQEL
SEWVGLENFSDDLILITGARAYHFEQIVNQLQQRIHGTTLEINLNALTHNFNFYKRRIKP
ETKVMVMVKAFAYGGGAVEIANHLQTLGADYLAVAFTDEGVILRKQGIQLPIMVLNPVQE
SFELCKTYDLEPVVFSLEFFTSLGNWCKNNQTQLKVHLDLDTGMRRLGFEEGHLEALSNL
IKTYPELIIQSLYTHLVGADEEIHRDYSQEQLDSFIRMKDQILPHLSQKPLLHALNSAGI
VAFPDYQLDMVRLGIGLYGVEVTGKHDRELQAISTLKTTISQVKRIEPGETIGYSRKGRL
ENGGKIATLSIGYADGYDRRFSNGKGYVLIHGKKAPVIGNVCMDMVMVDVTDIEVKAGDE
AIIYGSQISLKDLADRIGTIPYELLTNISSRVKRVYYLD
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgccttaactcctgagcaaattgcctccattaccggtgggaaattgcttggg
aaaaatctatcccttgaattaacacgggtcagcattgactctaggcaaattctgaatccc
acacagacgctttttgttgctttgaaaggagccaaagcggacggcgctaagtttatcccg
caattaatagaagaaggagtacaggtatttttggtttctgaatcctttcaaatccagaat
aaagagacctgctatatagctgttaaggacacaagaaaggcgctccagtcacttgccaaa
tatcaacgtgaactttttgaaaagcctgtggtcagcattacaggttctaacggaaaaacc
atagtcaaagaatggctgggacagattctaagtcaaaattatgccgtagcaaaaagtccc
aaaagctataattctcaagtaggattacccttatccgttttcgaaattcagccctatcat
caggtagctattttagaagtcggcgtttccaaaaaaggagaaatggaggctttgcaagct
attgcccaacccaatttgggagtctttaccaacattggaactgcgcacgatgagggtttc
gaaagccgggaagaaaaaattaaagaaaagcttcaactctttaaggattcggcccttttg
gtatacaacaaagaccaaaaagagctgagtaaaatcattgagacagcaatcgaaaatgaa
cgattaattgcttggtccgaccagcctggcgctgattatacacgagctatcaaatttcag
gatgagctcaccaaaatcattcttataaaatctgatttaagtactttcactttttacacc
cggttctcagatcaggcttccttagaaaatctgacccatacaattgtatctgcattgagt
ttgggcatgctttcagattctattcaaaaaggaatcaatttgctgagacaggtggacatg
agactgaccctcaaaccgggaatcaatgattctttgattattgacgacacctacaataat
gacttggcagggctgagggtatcattggattttatgcggcaacagaggcccaagagaaga
aagattttatttttatccgagtttcaacagcagggtcaacccgaaaaaatctatccagaa
gtagccgaactgatcaactcccattccttagacctggtagttgctgtaggggaaaatatc
catcctttgcaagagttgattcaaagtgaattcaaggcctttgcaagtacgcaggaactt
tcagagtgggttgggttagaaaacttttctgatgatctcatattgatcaccggtgcaaga
gcttatcattttgagcaaatagttaaccagcttcagcagagaattcacggtacaacttta
gaaatcaacctcaacgcactcacacataactttaacttctacaagagaagaattaaacca
gaaaccaaggtaatggtcatggtgaaggcctttgcttatggaggaggtgcagtagaaata
gcgaatcatcttcaaactttaggggctgattatctggctgtggcattcactgatgaagga
gtcatactgagaaagcagggaattcaacttcctattatggttttgaatccggtacaggag
tcgttcgaactctgcaaaacctacgatttagaaccggttgttttcagtttggagttcttt
accagtttggggaattggtgcaaaaacaatcaaacccaattgaaagtccatttagacttg
gataccggaatgaggagattaggatttgaggaggggcatctggaagccttgtccaacttg
atcaaaacctacccggaattgattattcagtccctttatacccatttggtaggggctgat
gaggaaattcatagagattattcccaagagcagctggatagttttattaggatgaaggat
caaattcttccacacctttcgcaaaagcctcttcttcatgccttaaactctgcaggcata
gtagcatttccagactatcaattggatatggtgaggttgggaattggcctttatggagtt
gaggtgaccggaaaacacgacagagagctccaggccatcagtactttgaaaactaccatc
tctcaggtaaaaaggatagagcccggagaaactataggctattcccgaaaaggaagattg
gaaaacggaggtaaaattgccacgctatccattggctacgcagacggatatgaccgtagg
ttcagcaatggcaaaggctatgtactgattcatggaaaaaaagctccagtcataggaaat
gtgtgcatggatatggtcatggtggatgtcactgatatagaagttaaagcgggagatgaa
gccattatttatggaagtcaaatctctctgaaggacttagctgaccgaatcgggactatc
ccttacgaactgctgacaaatatcagttctcgtgtgaagcgggtatactatcttgactaa
DBGET
integrated database retrieval system
