Algoriphagus sp. NBT04N3: GYM62_19660
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Entry
GYM62_19660 CDS
T09623
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03420
Nucleotide excision repair
algo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYM62_19660
03430 Mismatch repair
GYM62_19660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_19660
Enzymes [BR:
algo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYM62_19660
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYM62_19660
MMR (mismatch excision repair)
Other MMR factors
GYM62_19660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
DEAD
DUF3553
ERF
CowN
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYH40906
LinkDB
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Position
4536459..4538732
Genome browser
AA seq
757 aa
AA seq
DB search
MDYLKELNPPQREAVEHTEGPVMIIAGAGSGKTRVLTYRIAHLIYARGIDPFQILSLTFT
NKAAAEMKHRIESLVGLDARNTWMGTFHSVFAKILRVESEKIGYPSNFTIYDTDDSKSLI
RTIVKEMRLDDKVYKPGVVLSRISGAKNRLISWQAYQADPFVKADDEAAMKPKMGDIYQR
YQDRLFKAGAMDFDDLLFNTNVLFRDHIDVLNKYQQRFKYVMVDEFQDTNLSQYLITKKL
AAVHQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLMVVKLEQNYRSTKTIVEAANSI
IDKNKAQLKKTVWTSNPDGDLIELIKATSDNEEGRIVATTIFEEKNNKKLNNSDFAILYR
TNSQSRAIEEALRKMNLTYKIVGGLSFYQRKEIKDLMAYMRFTVNPVDEEAFKRIINYPK
RGIGDTSLEKILVAAYDHDMPLWDVVQNAQNFLPGRAGSSVDDFATMIKAFQIEVERKDA
YEAANSIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNEENEDKSLGAFLQEI
ALLTDNDRDKDTTDAITLMTIHSSKGLEFKQVFVVGMEEDLFPSQMMMQSREDLEEERRL
FYVATTRAMEKLYLTYALTRYRFGRLLNCEPSRFLEEVDPSCIKVSKKLSATREMPGAFR
REGLPGSSAERPGFIGIKKKPESRVPAQMKIHTPSPDFKPSNTNNLQAEQLVEHPKFGFG
KVQKIEVEGLNRKATIQFEHFGEKTLLLSFAKLRIID
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggattatctcaaagaacttaaccccccgcagcgggaagcagtagaacatacagaaggg
ccggtaatgattattgcgggcgcaggatctggaaagacccgggttttgacctatcggatc
gctcacctcatttatgcaagaggtatagatccttttcagattttatcgctcaccttcacc
aataaggcggcggcagaaatgaagcacaggattgagtctttggtaggtctggatgcgcgc
aatacctggatggggacttttcactctgttttcgctaagattttgagagttgaatccgaa
aaaataggctatccttccaatttcacgatttatgacacagatgactcgaagtctttgatc
cgtaccatcgtcaaagaaatgcgattggatgataaagtctacaaaccaggagtggtgctt
tcccgaatttccggggccaaaaaccgattgatttcctggcaggcctatcaagctgatcct
tttgtcaaagcggatgatgaggcagccatgaaacccaaaatgggagatatttatcagcgc
tatcaagatcgactttttaaagcgggagctatggattttgatgatttactatttaatacc
aatgtgcttttcagagatcacattgatgtattgaacaaataccagcagcgcttcaaatat
gtcatggtggatgagtttcaggatactaacctttctcaatacctgattaccaaaaagctg
gctgcagttcatcaaaatatctgtgtggtaggagatgatgcccaaagtatttatgctttt
cgcggagcggatatccagaatattctcaatttcgaaaaggactatccagatctgatggtg
gtcaaactggagcagaattacagatctaccaagactatcgtggaggcggctaactccatc
attgataaaaataaagcacaactgaaaaagaccgtttggacttccaaccctgacggagat
ctgatcgagctgatcaaggcaacttcagataatgaagaggggcgaatagttgcgaccaca
attttcgaagaaaaaaataacaaaaagcttaataacagcgactttgccattctttacagg
actaactctcagtctagagctatagaagaagccctgagaaagatgaatctgacctataag
attgtaggaggactttcattctatcagcgtaaagaaatcaaagacttgatggcttatatg
cgatttaccgttaatccggtagacgaagaggcctttaagcgcatcatcaattaccccaaa
agaggaattggagatacctctctggagaaaattttggttgctgcctacgatcatgatatg
cctttgtgggatgtggttcaaaatgctcaaaattttttacccggtcgagcaggaagctcg
gtggatgattttgctaccatgatcaaagcttttcagattgaagtggagcggaaagacgcc
tatgaagcagctaattccattgcgaagcagagcggtctattgagagaactgtatgaggat
aaaaccatagaaggactcaacagatatgaaaacgtacaggaattgctcaatgcaatcaaa
gagtacgtggacaatgaagaaaatgaggataaaagtctgggagcatttttacaggaaatt
gccctcttgacagacaatgaccgggacaaggataccaccgatgccattaccttgatgacc
attcactcctccaaaggcttggagtttaagcaggtttttgtggtaggaatggaagaggat
ttgtttccttcccagatgatgatgcagagcagggaagacttggaagaggagagaaggctg
ttctacgtggcgactacccgggcgatggaaaaattataccttacctatgctttgactcgt
tataggtttggtcgattgctgaattgtgagcctagcagattcctggaagaggttgatcca
agctgtatcaaagtgagtaaaaaactttccgcgaccagagagatgccgggagcatttaga
cgggagggtttacccggaagcagtgcagaaaggccgggtttcataggcattaagaaaaag
ccggagtcccgagtacctgctcaaatgaagattcatacgccaagtcctgacttcaaacca
agcaacaccaataatttacaggcggaacaactggtagagcatccgaagtttggttttgga
aaggttcaaaagattgaagttgaaggtcttaacagaaaggctacgattcagtttgaacat
tttggagagaagactttattacttagctttgcgaagctcagaattattgactaa
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