Algoriphagus sp. NBT04N3: GYM62_20180
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Entry
GYM62_20180 CDS
T09623
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo00010
Glycolysis / Gluconeogenesis
algo00020
Citrate cycle (TCA cycle)
algo00260
Glycine, serine and threonine metabolism
algo00280
Valine, leucine and isoleucine degradation
algo00310
Lysine degradation
algo00380
Tryptophan metabolism
algo00620
Pyruvate metabolism
algo00630
Glyoxylate and dicarboxylate metabolism
algo00640
Propanoate metabolism
algo00670
One carbon pool by folate
algo00785
Lipoic acid metabolism
algo01100
Metabolic pathways
algo01110
Biosynthesis of secondary metabolites
algo01120
Microbial metabolism in diverse environments
algo01200
Carbon metabolism
algo01210
2-Oxocarboxylic acid metabolism
algo01240
Biosynthesis of cofactors
Module
algo_M00009
Citrate cycle (TCA cycle, Krebs cycle)
algo_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
algo_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
algo_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
GYM62_20180 (lpdA)
00020 Citrate cycle (TCA cycle)
GYM62_20180 (lpdA)
00620 Pyruvate metabolism
GYM62_20180 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
GYM62_20180 (lpdA)
00640 Propanoate metabolism
GYM62_20180 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
GYM62_20180 (lpdA)
00280 Valine, leucine and isoleucine degradation
GYM62_20180 (lpdA)
00310 Lysine degradation
GYM62_20180 (lpdA)
00380 Tryptophan metabolism
GYM62_20180 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
GYM62_20180 (lpdA)
00670 One carbon pool by folate
GYM62_20180 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
algo04147
]
GYM62_20180 (lpdA)
Enzymes [BR:
algo01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
GYM62_20180 (lpdA)
Exosome [BR:
algo04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
GYM62_20180 (lpdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_oxidored
HI0933_like
GIDA
Lys_Orn_oxgnase
FAD_binding_2
NAD_binding_8
FAD_binding_3
AlaDh_PNT_C
DAO
Thi4
Gp_dh_N
3HCDH_N
TcaA_5th
Motif
Other DBs
NCBI-ProteinID:
QYH41006
LinkDB
All DBs
Position
4649275..4650672
Genome browser
AA seq
465 aa
AA seq
DB search
MYDVIVIGSGPGGYVAAIRAAQLGMKTAIIEKYSTLGGTCLNVGCIPSKALLDSSEHYHN
AAHTFKTHGINLSNLKVDLKQMISRKDDVVKQNVDGIQFLMKKNKIDVHHGMGSFVDKNT
IKVTKEDGNSEEIQGKNIIIATGSKPASLPFIKLDKDRVITSTEALKMKEIPKHLIVIGG
GVIGMELGSVYGRMGAKVSVVEFMDSLIPSMDKTMGKELQKSLKKLGFEFYLKHKVTSVE
NKGKEVIVKAENGKGETIEIKGDYVLVSIGRKPYTEGLNAEAAGVKLNDRGQVEVNEHLQ
TSASHIYAIGDVVKGAMLAHKAEEEGTFVAETIAGQKPHINYNLIPGVVYTWPEVASVGY
TEEQLKEKSIKYKSGKFPFMASGRARASMDTDGLVKVLADAETDEILGVHMIGPRTADMI
AEAVVAMEYRASAEDIARMSHAHPTYTEAFKEACLAATDNRALHI
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgttatagtaattggctccggcccgggaggatatgtggcagcgattagagct
gctcaattgggcatgaaaacagccattattgaaaaatattcaacattgggcggaacatgt
ctcaatgtaggttgtattccttccaaagctttacttgactcctcagagcattatcataat
gctgcccatactttcaaaactcatggtattaatttgagtaatctgaaagtggatttgaag
cagatgatttccagaaaggatgatgtggtcaaacaaaatgtggatgggattcaatttttg
atgaagaagaataaaattgatgtacaccacggaatgggttcttttgtagataagaatacc
atcaaagtgactaaagaggatggtaattctgaagagattcaaggcaaaaatatcattata
gctacaggttctaaaccagcttctttgccttttattaagctggataaggatagagtgatt
acttctaccgaagctttgaaaatgaaggaaattccaaagcacttgatcgtgataggcggt
ggtgtgattggaatggaactaggatccgtttatggtagaatgggagccaaagtttctgtg
gttgagtttatggattctttgattccttctatggataagactatgggcaaagagcttcaa
aagtctttaaagaaattaggctttgagttttatttgaagcacaaggtgacttctgtagaa
aataaaggaaaagaagtaatcgtaaaggctgaaaacggaaaaggagaaaccatcgagatc
aaaggcgattatgttttagtttctattgggagaaagccatatactgaaggcctgaatgct
gaagctgctggtgtcaagttgaatgacagagggcaagtggaagtgaatgagcatttgcaa
acttccgcctcacatatctatgctattggtgacgtagttaaaggtgctatgttggctcat
aaggctgaggaagaaggtacctttgttgcagaaacaattgccggtcaaaaaccacatatc
aattataacttgatcccgggagtagtctatacctggccggaggttgcttctgttggatat
accgaagagcaattgaaggaaaagagtataaaatataagtcagggaaatttccattcatg
gcatcaggtagagcaagagcctctatggatacggatggcttggtcaaagtcttagctgat
gcagagaccgatgaaatactgggagtacatatgattggacctagaactgcagatatgatc
gctgaagcagtggttgcgatggagtacagagcttctgcagaagatatcgcgagaatgtcc
catgctcaccctacttatactgaagcgtttaaagaggcctgtttggcggctactgataat
agagccttacatatataa
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