Altererythrobacter sp. BO-6: G6N82_02350
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Entry
G6N82_02350 CDS
T06465
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alh
Altererythrobacter sp. BO-6
Pathway
alh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6N82_02350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alh03019
]
G6N82_02350
Enzymes [BR:
alh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G6N82_02350
Messenger RNA biogenesis [BR:
alh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G6N82_02350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
P-loop_SecA
ERCC3_RAD25_C
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QIG53148
LinkDB
All DBs
Position
complement(483707..485095)
Genome browser
AA seq
462 aa
AA seq
DB search
MKFENLGLSQPVLQALDLKGYDTPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSI
DRLREADNRIPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVQSIVGGTSVGKDRNK
LHRGTDILVATPGRLLDLIDQKAFNLSGVEILVLDEADQMLDLGFIHALRRIHQLAPAER
QTLFFSATMPKAIKELVGQYCNNPVQVSVTPAATTAERIDQYLFMVQQDEKQTLLEMILQ
ERHQVPGKFERVLIFTRTKHGADRVVKRLSQIGIPANAIHGNKSQPQRERALAEFKSART
PILVATDVAARGIDIPGVSHVINFELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERDY
LKDIRKNTDAEFERLPLPDNFRAVVEGVGPTKRAAPGQRTRVSPKPRGAPRPQGEAASQP
KPKQKHPSRKGKPNRPGGFRGKPGGGSRRGSGGRRGPRAASA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaaaatctcgggctgtcgcagcccgttctccaggccctcgacttgaagggc
tatgacacgccaaccccgatccaggcgcaggcgatcccgcctgtgctcgaagggcgcgac
ctgctgggtatcgcccagaccggcaccggcaagaccgcagccttcatgctgcctagcatc
gaccggctgcgcgaggctgacaatcgcatcccgttcaagagctgccgcatgctggtgctc
gcgccgacccgcgaactcgccgggcagattgcccagagcgctaaggattacggcgcaatg
gccggcctcaaggtgcaatcgatcgtcggcggcacttcggtgggcaaggatcgcaacaag
ctgcaccgcggcaccgatatcctggttgccacgcccggtcgcttgctcgacctcattgac
cagaaggcgttcaacctttcgggcgtggaaatcctcgtactcgacgaagccgaccagatg
ctcgacctcggcttcatccatgcgctgcgccgcatccaccagctcgccccggccgagcgg
cagacgctgtttttcagcgccaccatgcccaaggcgatcaaggaactggttggccagtat
tgcaacaatccggtgcaggtcagcgtgaccccggcggcgaccactgccgaacggatcgac
cagtacctgttcatggtgcagcaggacgagaagcagacgctgctggagatgatcctgcag
gaacgccaccaggtgcccggcaagttcgagcgcgtgctgatctttacccgcaccaagcac
ggcgcggatcgtgtggtaaagcggctgtcgcagatcggcattcccgccaatgcgatccat
ggcaacaagagccagccgcagcgtgagcgggcactggcagaattcaaatcggcccgcacg
ccgatcctcgtcgcgaccgatgtggctgcgcgcggcatcgacattccgggcgtgagccat
gtgatcaatttcgagctgcccaatgtgcctgagcagtatgtccaccggatcgggcggacc
gcacgcgccggggcggacgggatcgcgatcgctttctgtgccgaggacgagcgcgactat
ctcaaggacattcgcaagaataccgatgcggagttcgagcgcctgccgctgcccgataac
ttccgcgccgtggtggaaggcgtcggcccgaccaagcgcgccgcgccgggccagcgcacc
cgcgtgagtcccaagcccaggggcgcgccgcgtcctcagggcgaagctgccagccagcca
aaaccgaagcagaagcacccgtcgcgcaagggcaagcccaatcgcccgggtggcttccgc
ggcaagccgggcggaggtagtcgccgtggttcgggcggacggcgcgggccgcgcgctgcc
agcgcgtaa
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