Azospirillum lipoferum: AZOLI_0386
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Entry
AZOLI_0386 CDS
T01658
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ali
Azospirillum lipoferum
Pathway
ali03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ali00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZOLI_0386 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ali03019
]
AZOLI_0386 (rne)
03009 Ribosome biogenesis [BR:
ali03009
]
AZOLI_0386 (rne)
Enzymes [BR:
ali01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AZOLI_0386 (rne)
Messenger RNA biogenesis [BR:
ali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZOLI_0386 (rne)
Ribosome biogenesis [BR:
ali03009
]
Prokaryotic type
rRNA processing factors
AZOLI_0386 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CBS85776
UniProt:
G7Z8H4
LinkDB
All DBs
Position
complement(370513..373602)
Genome browser
AA seq
1029 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVNGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLAEERRLEEQAEARAEAAADGAVMGEPIRPE
QVVEEWSPMPSPIAPEASDEDAGDEDGEDENGSEENGSGDQAAPSEAAAQTADAPDMVGG
DEDEEVETQRRRARPLRSYKIQEVVKRRQVLLVQVTKEERGNKGAALTTYLSLPGRYCVL
MPNTGRGGGISRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLL
RLWDDIREQTLKSSAPCLIYEEANLIKRSIRDLYSNDIDEIWVEGEAGFRTAREFMDMLM
PGHSQRVQLYRDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGK
STRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMK
NDRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIE
EEGIRKRSAEITIYVPTSIALYILNQKRGELAKIEERHSFHVMVQADDSLIAPDHRLERN
KARLPDEDGPLVSADRVMAETDRALAAEPVVEPVEEEVDVETAQAEETGERAETNGANGD
GNGEDRRRRRRRRRGRGRDREEGRVEGDTTGAGEDAEESDETGDEAAETGLPVAAEAIPD
AAISEPAEDDDSDEDDGEGEGEGDEETGADAGDRNGEGRKKRRRGKRGGRRRSRREGAEG
LEGGEETAADQPSAAPAEAAPAQAPAQSPAEASDLDWILAGDSAPAPVTEEAPVPVPATE
PPVTAPAPTPTEAAVEKAPAKKASRKRKTAAEAPVEAASAPAVAEAPARGRKRKAAAPVE
APVEAAAEPVTEQAPAKKASRKRKAAAEAPVEAAPAAAPAVAEAPAKGRKRKAAAAEAPA
AVATDAAPAKKASRKRKAAAEAPAEAAPAAAPTAPEPAPAAAPEPAEAPAAAGDNGETSA
KPRRGWWKR
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaagaaacccgggtcgccgtggtc
aatggtaaccggctggaagaactcgacttcgagatcgccagccgcaagcagctgaagggc
aacatctacctcgcgaaagtgacgcgggtcgagccttcgctccaggcggccttcgtggaa
tatggcggcaaccgccatggcttcctcgccttctccgaaatccatcccgactattaccgc
atccccgtcgccgaccgcgaggccctgctggccgaagagcgccggctggaggaacaggcg
gaagcccgggccgaggccgccgccgacggcgccgtgatgggcgagccgatccgccccgag
caggtggtcgaggaatggtcgccgatgccctcccccatcgcgccggaggcgtccgacgag
gatgccggcgacgaggacggtgaggacgagaacggttccgaggagaacggttcgggggat
caggccgcaccgtccgaggccgccgcccaaaccgccgacgcccctgacatggtcggcggc
gacgaggatgaagaggtcgagacccagcgccgccgcgcgcgcccgctgcgctcctacaag
atccaggaagtggtgaagcgccggcaggtcctgctggtgcaggtgacgaaggaggagcgc
ggcaacaagggcgccgccctgaccacctacctgtcgctgcccggccgctactgcgtcctg
atgcccaacaccggccgtggcggcgggatttcccgcaagatcaccaacccggccgaccgc
aagcgcctgaaggaaatcctgtccgacctggacattcccgacggcatggcggtcatcctg
cgcaccgccggtctggagcgttccaagcccgagatcaagcgcgacctggaatatctgctg
cgcctgtgggacgacatccgtgaacagacgctgaagtcgtcggcgccctgcctcatctat
gaagaggcgaacctgatcaagcggtcgatccgcgatctgtattccaacgacatcgacgag
atctgggtcgagggcgaggccggcttccgcacggcgcgcgagttcatggacatgctgatg
ccgggccattcccagcgcgtccagctgtaccgcgacagccagatcccgctgttccaccgc
tatcaggtggaaacccagatcgacgccatccacagcccggtggtgcagctgcgctccggc
ggctacatcgtcatcaacccgaccgaggcgctggtctccatcgacgtcaactccggcaag
tcgacccgcgagcgcaacatcgaggaaaccgcctacaagaccaacctggaggccgccgac
gaggtggcgcgccagctgcgtctgcgcgatctggccggcctgatcgtcatcgacttcatc
gacatggaggagccgcggaacaacgccgccgtcgagcgccgcatgaaggaggcgatgaag
aacgaccgggcgcgcatccagctcggccgcatctccgccttcggtcttctggagctgtcg
cgccagcgtctgcgcccgtcgctgctggagaccaacttcgagcgctgcccgcactgctcg
ggcaccggcgtcgtccggtcggtcgaatccgcctcgctgcacgtcctgcgcgccatcgag
gaagagggcatccgcaagcggtcggcggagatcaccatctacgtcccgacctccatcgcg
ctctacatcctcaaccagaagcgcggtgaactggccaagatcgaggagcgtcacagcttc
catgtcatggtccaggccgacgacagcctgatcgccccggaccaccgcctggagcgcaac
aaggcccggctgcccgacgaggacggtccgctggtcagcgccgaccgtgtcatggccgag
accgaccgtgcgctcgccgctgagccggtcgtcgagccggtcgaggaggaggtcgacgtc
gagaccgcccaggccgaggagaccggcgagcgcgccgagaccaacggcgccaatggcgat
ggcaatggcgaggatcgccgccgtcgtcgccggcgccgccgtggccggggccgtgaccgc
gaggaaggccgcgtcgaaggcgacaccaccggtgcgggcgaagacgccgaggagtccgac
gagacgggcgacgaagcggccgagaccggcctgccggttgccgccgaggcgatccccgac
gctgccatctccgagccggccgaagacgacgactcggatgaggatgacggcgagggcgaa
ggcgagggcgacgaggagaccggcgccgacgccggcgatcgcaatggcgagggtcgcaag
aagcgtcgccgcggcaagcgcggcggtcgccgccggtcccgccgcgagggtgcggagggg
ctggaaggcggcgaggagactgctgccgatcagccgtctgccgctccggccgaagccgct
cccgcccaggcgcccgcacagtctccggccgaggcgtccgacctcgactggatcctggcc
ggcgacagcgctccggcaccggtcacggaagaggcccctgttccggtgcctgcgaccgag
ccgccggtgaccgctccggccccgaccccgaccgaagccgccgtcgagaaggctccggcc
aagaaggcgtcgcgcaagcgcaagaccgctgccgaggctccggtcgaagccgcgtccgcg
cctgccgtcgccgaagcgccggccaggggccgcaagcgcaaggccgccgctccggtggaa
gcgccggtggaagccgctgccgagccggtgacggagcaggctccggccaagaaggcgtcg
cgcaagcgcaaggccgctgccgaagccccggtcgaggccgctcccgctgccgcgcctgcc
gtcgccgaagcgccggccaagggccgcaagcgcaaggccgccgccgcggaagccccggct
gcggtcgcgaccgacgcggctccggccaagaaggcgtcgcgcaagcgcaaggccgctgcc
gaggctccggccgaagccgccccggccgccgctccgactgcacccgagccggctcccgcc
gccgctccggaacctgccgaggctccggctgcggccggcgacaacggcgaaacctccgcc
aagcctcgccgcggctggtggaagcggtaa
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