KEGG   Azospirillum lipoferum: AZOLI_0450
Entry
AZOLI_0450        CDS       T01658                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ali  Azospirillum lipoferum
Pathway
ali03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ali00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AZOLI_0450 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ali03021]
    AZOLI_0450 (rpoB)
   03400 DNA repair and recombination proteins [BR:ali03400]
    AZOLI_0450 (rpoB)
Enzymes [BR:ali01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AZOLI_0450 (rpoB)
Transcription machinery [BR:ali03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AZOLI_0450 (rpoB)
DNA repair and recombination proteins [BR:ali03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AZOLI_0450 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: CBS85825
UniProt: G7Z361
LinkDB
Position
421887..426011
AA seq 1374 aa
MPNLIEVQRSSYDHFLQMDVAPEKRANLGLQEVFKSVFPIKDFSDRAVLDFVKYELEQPK
YDVEECQQRGMTFAAPLKVTLRLSVFDVEEDTGLRSIRDIKEQDVYMGDMPLMTANGTFI
INGTERVIVSQMHRSPGVFFDHDKGKTHASGKYLFAARVIPYRGSWLDFEFDAKDLVYVR
IDRRRKLPATTLLFALDSAETEALRTERKANRKDLLPYEAQGMSKEEILNYFYDTITYSR
SAGGWKTPFSAERMKGVKLASDLVDAATGAIVAEAGTKMTPRVIKKLVEAGLTEQQVSTE
ELTGRYLAVDIINERTGEVLFEAGDELSASDLEKLEKTGVDELPVLAIDHLNVGAYIRNT
MSADRNASREDALIDIYRVMRPGEPPTLESAEALFSGLFFDSERYDLSAVGRVKMNARLN
FQTDDQMRVLRKEDILEILKVLVNLKDGRGEIDDIDHLGNRRVRSVGELMENQYRVGLLR
MERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETSEGPNIGLINSLATYARVNQYGFIESP
YRKVIDGKVTNEVVYLSAMEEGRYVVAQANAELNPDNSFAADLVSCRQGGEYLMFRPEAI
DLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEATVAR
DSGVTIVAKRSGIVDQVDATRIVVRATDSSDSTAPGVDIYNLLKFQRSNQNTCITQRPLV
KVGDRVNAGDIVADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILINERIVKDDVFTSI
HIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDEAGIVYIGAEVRPGDILVGKVTPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVVGTIVEVRVFSRRGVDKDERALAIERA
EIEKLAKDRDDERGILERSFYTRLKEVLLGQTAQSGPKGMKGGTVLTEEVLGGLSKGLWR
QIAIADEQVMETVENLGKVFDDSIKALQDRFENKVDKLQRGDELPPGVMKMVKVFVAVKR
KLQPGDKMAGRHGNKGVVSRIIPQEDMPYLEDGTPVDLVLNPLGVPSRMNVGQILETHLG
WAASGLGRQIGRAVDQYRLAIRQKAEGAPQLEALRSTLKSAYGEVTYNEDIADMNDAELL
ELGGNLRKGVPFATPVFDGAREEDICVHLERAGFDRSGQSTLIDGRTGETFDRKVTVGYI
YMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEGWALEAYGAAYTLQEM
LTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNVLVKELRSLGLNVELNQRSY
NT seq 4125 nt   +upstreamnt  +downstreamnt
atgcccaacctcatcgaggtgcagcgcagctcctacgatcacttcctgcaaatggacgtc
gccccggaaaagcgggcgaacctgggcctgcaggaagtcttcaagtcggtcttcccgatc
aaggacttctccgaccgcgcggtgctggatttcgtcaagtacgagcttgagcagccgaag
tacgacgtcgaggagtgccagcagcgcggcatgaccttcgccgccccgctgaaggtaacc
ctgcgcctgtccgtgttcgacgtcgaggaagataccggcctccggtccatccgcgacatc
aaggagcaggacgtctacatgggcgacatgcccctgatgacggccaacggcaccttcatc
atcaacggcaccgagcgcgtcatcgtctcccagatgcaccgcagcccgggtgtcttcttc
gaccatgacaagggcaagacccacgcgtcgggcaagtacctgttcgccgcccgcgtcatc
ccctatcgcggttcctggctcgacttcgagttcgacgccaaggatctcgtctatgtgcgc
atcgaccgccgccgcaagctgccggccaccacgctgctgttcgccctggacagcgcggag
accgaggctctgcgcaccgagcgcaaggcgaaccgcaaggacctgttgccttacgaggcg
cagggcatgtcgaaggaagagatcctcaactacttctacgacacgatcacctacagccgc
tccgccggcggttggaagaccccgttcagcgccgagcgcatgaagggcgtcaagctggcg
tccgacctggtcgatgccgccaccggcgccatcgtcgccgaggccggcaccaagatgacc
ccgcgcgtcatcaagaagctggtcgaagccggcctgaccgagcagcaggtctccaccgag
gagctgaccggccgctatctcgccgtcgacatcatcaacgagcgcacgggcgaagtcctg
ttcgaagccggtgacgagctgtcggcgagcgacctggagaagctggagaagaccggcgtc
gacgaactgccggtgctggcgatcgaccatctgaacgtcggcgcctacatccgcaacacc
atgtcggccgaccgcaacgccagccgcgaagacgcgctgatcgacatctaccgcgtcatg
cgtccgggcgagccgccgaccctcgagtcggccgaggcgctgttctcgggcctgttcttc
gacagcgagcgctacgacctgtcggccgtcggccgcgtcaagatgaacgcgcgcctgaac
ttccagaccgacgaccagatgcgcgttctccgcaaggaggacatcctggagatcctgaag
gttctggtgaaccttaaggacggccgcggcgaaatcgacgacatcgaccatctcggcaac
cgccgcgtgcgctccgtcggcgagctgatggagaaccagtaccgcgtcggcctgctgcgc
atggaacgtgcgatccgcgagcgcatgagctcggtcgagatcgacacggtgatgccgcac
gacctgatcaacgccaagccggccgccgccgccgtgcgcgagttcttcggctcgtcgcag
ctgtcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgtcgtctc
tcagctctcggcccgggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtg
cacccgacgcactacggccgcatctgcccgattgagacctccgaaggtccgaacatcggt
ctgatcaactcgctggcgacctatgcccgcgtgaaccagtacggcttcatcgagagcccc
taccgcaaggtcatcgacggcaaggtcaccaacgaggtggtctatctgtcggcgatggag
gagggccgctacgtcgtcgcccaggcgaatgccgagctgaaccccgacaacagcttcgcc
gccgatctggtgtcctgccgccagggcggcgaatacctgatgttccggccggaagcgatc
gacctgatcgacgtgtcgccgaagcagctggtgtccgtcgccgcggcgctgatcccgttc
ctggagaacgacgacgccaaccgtgcgctgatgggctccaacatgcagcgtcaggcggtg
ccgctggtgaaggccgacgcgccgctggtcggaaccggcatggaggcgaccgtcgcccgc
gacagcggcgtgaccatcgtcgccaagcgttcgggcatcgtcgaccaggtcgacgccacc
cgcatcgtcgtgcgcgccaccgacagctccgacagcacggcgccgggcgtcgacatctac
aacctgctgaagttccagcgttccaaccagaacacctgcatcacccagcgcccgctggtg
aaggtgggtgaccgggtgaacgccggcgacatcgtggccgacggcccgtcgaccgacctg
ggcgagctggcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaac
ttcgaggactcgatcctcatcaacgagcgcatcgtcaaggacgacgtcttcacctcgatc
cacatcgaggaattcgaggtcatggcccgcgacaccaagctgggccaggaggaaatcacc
cgcgacattccgaacgtgggtgaagaagctctgaagaacctcgacgaggccggcatcgtc
tacatcggcgccgaagtccgtccgggcgacattctggtcggcaaggtgacgccgaagggc
gagagcccgatgacgccggaagagaagctgctgcgcgccatcttcggcgaaaaggcctcc
gacgtccgcgacacctcgctgcgcctgccgccgggtgtcgtcggcaccatcgtcgaggtc
cgcgtgttcagccgccgcggcgtcgacaaggacgagcgcgcgctcgccatcgaacgcgcc
gagatcgagaagctggccaaggaccgcgacgacgagcgcggcatcctggagcgcagcttc
tacacccgcctgaaggaagtgctgctcggccagaccgcgcagtccggcccgaagggcatg
aagggcggcaccgtcctgaccgaggaggtgctgggcggcctgtcgaagggcctgtggcgc
cagatcgccatcgccgacgagcaggtgatggagacggtcgagaacctgggcaaggtgttc
gacgactcgatcaaggccctgcaggaccgcttcgagaacaaggtcgacaagctgcagcgc
ggtgacgagctgccgccgggcgtcatgaagatggtcaaggttttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtctcgcgc
atcatcccgcaggaggacatgccctatctggaggacggcaccccggtcgatctggtgctg
aacccgctgggcgtgccgtcgcgcatgaatgtcggtcagatcctggaaacccaccttggt
tgggcggcttcgggtctcggccggcagatcggacgcgcggtcgaccagtaccgtctggcg
atccgtcagaaggccgaaggtgctcctcagctggaggccctgcgcagcacgctgaagtcg
gcgtatggcgaggtgacctacaacgaggacatcgccgacatgaacgacgccgagctgttg
gagctgggcggcaacctgcgcaagggcgttcccttcgcgacgccggtcttcgacggcgct
cgcgaggaggacatctgcgtccatctggaacgggccggcttcgaccgctcgggccagtcg
acgctgatcgacggccgtaccggcgagactttcgaccgcaaggtgaccgtcggctacatc
tacatgctgaagctgcaccacctggtggacgacaagatccacgcccggtcgatcggcccc
tactcgctggtcacgcagcagccgctgggcggcaaggcccagttcggcggtcagcgcttc
ggtgagatggagggctgggcgctcgaagcctacggcgccgcctacacgctgcaggaaatg
ctgacggtgaagtcggacgacgtgtccggccgcaccaaggtctacgaggccatcgtccgc
ggcgacgacaacttcgaggccggcattccggagtcgttcaacgtgctggtcaaggagctg
cgctcgctcggcctgaacgtcgaactgaaccagcggtcctactga

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