Azospirillum lipoferum: AZOLI_0451
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Entry
AZOLI_0451 CDS
T01658
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ali
Azospirillum lipoferum
Pathway
ali03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ali00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AZOLI_0451 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ali03021
]
AZOLI_0451 (rpoC)
03400 DNA repair and recombination proteins [BR:
ali03400
]
AZOLI_0451 (rpoC)
Enzymes [BR:
ali01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AZOLI_0451 (rpoC)
Transcription machinery [BR:
ali03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AZOLI_0451 (rpoC)
DNA repair and recombination proteins [BR:
ali03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AZOLI_0451 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CBS85826
UniProt:
G7Z362
LinkDB
All DBs
Position
426114..430286
Genome browser
AA seq
1390 aa
AA seq
DB search
MNELMNIFGQVQGPQSFDQIRIQIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERILYFENYVVIEPGLTPLKLHSLLSEEEYMNAQDEYGEDAFTAS
IGAEALRIMLSALDLDEEKKRCREDLRDTNSEAKRKKLVKRLKLIDAFLASQSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYISMDRPSEKGEGMVFANVSEIEQALNA
KVLSIHAKIKARYVGVDDEGNEQISIVETTPGRMLLSELLPRHPKVPFSLINRVLTKKDV
GNVIDAVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPVAKEKLVNESKERV
KEFEQQYLDGLITQGEKYNKVVDVWSECTEKVASEMMKAISTTEAGKPVNSVYMMAHSGA
RGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIVEHDCGTERGITVKAVIDGGEVISPLGDRILGRTVVGDVID
PLNGELIVEDGGLIDEPTVDRIERSGIDSVKIRSVLTCETRDGVCAKCYGRDLARGTLVN
TGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQIEAAFDATVRINNRNVVMNSS
GIPVVMGRSTEVILLDDQGRERARHRVPYGAKLLADEGVKVERGAKLAEWDPYTLPIITE
RAGTARYIDLVEGISMREVMDEATGISSKVVVDWRQQPRGADLKPRIALVDERGELITLP
NGLEARYFMSVDAILSVENGAEVRAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAIISEMSGRVEFGKDYKTKRRIVVRNDETGDEKEYLIPKGKHISVQEGDYVERGDLLMD
GNPVPHDILAVMGVEALADYLINEIQDVYRLQGVKINDKHIEVIVRQMLQKVEITDAGET
TFLVGEQVDRQEFDEENEKTVAEGLQPAHGHPVLQGITKASLQTRSFISAASFQETTRVL
TEAAVGGKVDNLEGLKENVIVGRLIPAGTGSVVNRLKLIAAERDREAALEAGAPEETPAL
PTPGEESSAA
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttgatgaacattttcggccaggtccaggggccgcagagcttcgatcagatc
cgcatccagatcgcgagccccgagcggatccggtcctggtcctacggcgagatcaagaag
ccggaaaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcccgc
atcttcggcccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaagtat
cgcggcatcatctgcgagaagtgcggcgtcgaggtcacgctgtcgaaggtccggcgcgag
cgcatgggccatatcgagctggcctcccccgtcgcgcacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctcgacatgacgctcaaggatctggagcgcatcctctat
ttcgaaaactacgtcgtcatcgagccgggcctcaccccgctgaagctgcattcgctgctc
agcgaggaagagtacatgaacgcccaggacgagtatggcgaggacgccttcaccgcgtcg
atcggtgccgaagcgctgcgcatcatgctgtccgcgctcgacctcgacgaggagaagaag
cgctgccgtgaggatctgcgcgacaccaactccgaagccaagcgcaagaagctggtcaag
cgcctgaagctgatcgacgccttcctggcctcgcagtcgcgccccgaatggatgatcctg
gaagtcattccggtgatcccgcccgagctgcgtccgctggttccgctcgacggcggccgt
ttcgccacgtcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatcgagttgaaggcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggaggccgtcgacgctctgttcgacaacggccgccgtggccgcgtcatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcgtcggtccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccc
ttcatctacgccaagctggagctgtacggcctcgcctccaccatcaaggccgccaagcgg
atggtcgagaaggagcgtcccgaggtgtgggacatcctggaagaggtcatccgcgagcat
ccggtgatgctgaaccgtgcgccgacgctgcaccgtctcggcatccaggcgttcgagccg
acgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgctgagcctcgaggcccagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggatatcgtcctcggcatctactacatctcgatggaccgcccgagt
gagaagggcgagggcatggtgttcgccaacgtctcggagatcgagcaggcgctgaacgcc
aaggtcctgtcgatccatgcgaagatcaaggcgcgctacgtcggcgtggacgacgagggc
aacgagcagatcagcatcgtcgagacgacgccgggccgcatgctgctgtcggaactgctg
ccgcgtcacccgaaggtgcccttctcgctgatcaaccgcgtcctgaccaagaaggacgtc
ggcaacgtcatcgacgccgtctatcgccactgcggccagaaggagacggtgatcttcgcc
gatcgcctgatgaagctgggcttcggccacgcctgccgcgccggcatttccttcggcaag
gacgacatggtcatccccgttgccaaggagaagctggtcaacgagtcgaaggagcgggtg
aaggagttcgagcagcagtatctcgacggcctgatcacccagggcgagaagtacaacaag
gtcgtcgacgtctggtcggagtgcaccgaaaaggtcgcctccgagatgatgaaggcgatc
tcgaccaccgaagccggcaagccggtcaactcggtgtacatgatggcccactccggtgcg
cgcggttccgccgcgcagatccgtcagctggccggcatgcgcggcctcatggccaagccg
tcgggcgagatcattgagacgccgatcatctcgaacttcaaggaaggcctgaccgtgctg
gagtacttcaactccacccacggcgcccgcaagggtctggccgacaccgccttgaagacg
gcgaactccggttacctgacccgccgtctggtcgacgtggcgcaggacgccatcatcgtc
gagcatgattgcggcaccgagcgcggcatcaccgtgaaggcggtgatcgacgggggcgaa
gtcatcagcccgctgggcgaccgcatcctcggccgcaccgtggtcggcgacgtgatcgac
ccgctgaacggcgagctgatcgtcgaggacggcggcctgatcgacgagccgacggtcgac
cgcatcgagcggtcgggcatcgactcggtgaagatccgctcggtcctgacctgcgagacc
cgcgacggcgtctgcgccaagtgctacggccgtgacctggcccgcggcacgctggtcaac
accggcgaggcggtcggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagctg
acgatgcgtaccttccacatcggtggtgcggcgcagcgcggtgcggagcagagccagatc
gaggcggcgttcgatgcgacggtgcggatcaacaaccgcaacgtcgtcatgaactcgtcc
ggcatcccggtcgtcatgggccgcagcaccgaagtcatcctgctcgatgaccagggccgc
gagcgggcgcgtcaccgcgtgccgtacggtgccaagctgctggccgacgagggcgtgaag
gtcgagcgcggcgccaagctggccgagtgggacccgtacaccctgccgatcatcacggag
cgtgccggtaccgcccgctacatcgacctcgtggaaggcatctccatgcgcgaggtgatg
gacgaggcgacgggcatcagctccaaggtggtggtcgactggcgccagcagccgcgcggt
gccgatctgaagccgcgcatcgcgctggtggacgagcggggcgagctgatcaccctgccg
aacggactggaagcccgctacttcatgtcggtggacgccatcctgtcggtggagaacggt
gccgaggtccgggccggcgacgtgctggcgcgtatcccgcgcgagtcgtcgaagacccgc
gacatcaccggcggtctgccgcgcgtggccgagctgttcgaggcgcgtcgtccgaaggac
ttcgccatcatctcggaaatgagcggccgcgtcgaattcgggaaggactacaagaccaag
cgccgcatcgtcgtccgcaacgacgagaccggtgacgagaaggagtatctgatcccgaag
ggcaagcacatctccgtgcaggaaggcgattacgtcgagcgcggcgatctgctgatggac
ggcaacccggtgccgcacgacatcctggcggtgatgggtgtggaggccttggccgactac
ctgatcaacgaaatccaggacgtctaccgactgcagggcgtgaagatcaacgacaagcac
atcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacgccggcgagacc
accttcctggtgggcgagcaggtcgaccgtcaggagttcgacgaggagaacgagaagacg
gtcgccgaggggctgcagccggcccacggccacccggttctccagggcatcaccaaggcc
agcctgcagacgcggtccttcatctcggccgcgtcgttccaggaaaccacccgcgtcctc
acggaagcggccgtcggcggcaaggtcgacaacctggaaggcctgaaggagaacgtcatc
gtcggccgtctgatcccggccggcacgggctccgtggtgaaccgcctgaagctgatcgcc
gccgagcgtgaccgcgaagcggccctggaagccggcgctccggaggaaactccggccctg
ccgaccccgggcgaggaaagctccgcggcgtga
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integrated database retrieval system
