Azospirillum lipoferum: AZOLI_2273
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Entry
AZOLI_2273 CDS
T01658
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ali
Azospirillum lipoferum
Pathway
ali03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ali00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZOLI_2273 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ali03019
]
AZOLI_2273 (rnr)
03016 Transfer RNA biogenesis [BR:
ali03016
]
AZOLI_2273 (rnr)
Enzymes [BR:
ali01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AZOLI_2273 (rnr)
Messenger RNA biogenesis [BR:
ali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZOLI_2273 (rnr)
Transfer RNA biogenesis [BR:
ali03016
]
Prokaryotic type
tRNA degradation factors
AZOLI_2273 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
FaeA
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CBS87492
UniProt:
G7Z292
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All DBs
Position
2142735..2144891
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AA seq
718 aa
AA seq
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MTDSHFPGKDAILAFIRSSTTPVGKREIARAFKLSGSADREMLKDLLRELEADGAVERGR
NKRMAPPQSLPAVAVLLITGVDADGELSARPLTWTGEGNPPRIFLLPEKKSRGEGKPLAV
GDTLLAKLARINDRLYEARVIRRIDGEREGRILGVYRPSADGGRILPTDRRHKTEFLVLP
PNRGDAEAGDLVFADILPAGRAGQPQARVVERLGSTDEPRAFSLIAIHAHGIPTVFPHAA
LREAELAAVPALMQREDLRDIPLVTIDGADARDFDDAVWAEADSDPENPEGWHLIVAIAD
VSYYVRPGSALDRAAYERGNSVYFPDRVVPMLPEALSNGLCSLRPGEDRACLAFHLWIDR
NGVLIRHRLVRGLMRSAARLTYEQVQSCHDGLPDDVTAPLAESVIAPLFGAYARLAAARA
KRGTLELDLPERRVRIDERGRVAEIAVRERHDSHRLIEEFMIAANVAAAEVLERRTMPGL
YRIHDRPSMDKMEALRGFLADIGHPLGKSADLTPSHFTRILRKVAGTSHAPLVSEVILRA
QAQAAYSPDNIGHFGLALHRYAHFTSPIRRYADLIVHRALIRTLGLGVGGLDDETLGRLA
EIGEHLSGTERRAAAAERDAVDRYTAAFLADRIGERFSGRIAGVSRFGLFVRLDESGADG
LIPASTLPDDRYDHDEAAHALVGQRTGRTYRLSSPVKVVLTEADPVSGSMLFRLADSD
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacagccatttccccggcaaggatgccattctcgccttcatccggtccagcacc
acccccgtcggcaagcgcgagatcgcccgcgccttcaagctgtccggatcggcggaccgc
gagatgctgaaggatctcctgcgcgagttggaggccgatggcgcggtggagcggggccgc
aacaagcgcatggccccgccgcagtcgctgccggccgtcgccgtgctgctgatcaccggc
gtcgatgcggacggcgagttgtcggcccgcccgctgacctggaccggcgagggcaacccg
ccgcgcatcttcctgctgccggaaaagaaatcgcggggcgagggaaagccgctggcggtg
ggcgacacgttgctggcgaagctcgcccgcatcaacgaccgcctctatgaggcccgcgtc
atccgccgcatcgacggagagcgcgagggccgtatcctcggcgtctaccggccgagcgcc
gatggcgggcgcatcctgccgaccgaccgccgccacaagaccgagttcctggtgctgccg
cccaaccgcggcgacgccgaggccggcgacctcgtcttcgccgacatcctgccggccggg
cgcgccggccagccgcaggcccgcgtggttgaacggctgggctccaccgacgaaccgcgc
gccttcagcctgatcgccatccacgcccacggcatccccaccgtgttcccgcacgcggct
ctgcgcgaggcggaattggcggcggtgccggcgctgatgcagcgggaggatctgcgcgac
atcccgctggtgaccatcgacggtgccgacgcccgcgacttcgacgatgcggtgtgggcg
gaggcggacagcgacccggagaatccggaaggctggcacctgatcgtcgccatcgccgac
gtgtcctactacgtacgccccggatcggcgctcgaccgggcggcgtacgagcgcggcaac
tcggtgtacttccccgaccgcgtcgtgccgatgctgccggaagcgctgtcgaacgggctg
tgctcgctgcggccgggggaggaccgcgcctgtctggccttccacctgtggatcgaccgc
aacggtgtgctgattcggcaccggctggtccgcggactcatgcggtcggcggcgcggctg
acctatgaacaggtgcagagttgccacgatggcctgccggacgacgtgacggcgccgctg
gccgaaagcgtgatcgccccgctgttcggcgcctacgcccggctcgccgccgcccgtgcc
aagcgcggcacgctggaactcgacctgccggaacgccgcgtccgcatcgacgagcgcggg
cgggtcgcggagatcgcggtgcgcgagcgccacgacagccaccggctgatcgaggagttc
atgatcgccgccaacgtcgcggcggcggaagtgctggaacggcgcaccatgcccggcctc
taccgcatccacgaccgcccctccatggacaagatggaggcgctgcgcggcttcctcgcc
gacatcggccatccgctgggcaagagcgccgatctcacgcccagccacttcacccgcatc
ctgcgcaaggtggcgggcacgtcgcacgcgccgctggtcagcgaggtgatcctgcgcgcc
caggcgcaggccgcctacagcccggacaacatcggccatttcgggctggcgctgcaccgc
tacgcccatttcacctcgccgatccgccgctatgccgacctgatcgtccaccgggcgctg
atccgcacgctggggctgggcgtcggcgggctggacgacgagacgctgggccggctggcg
gagatcggggagcatctgtcgggaaccgaacgccgcgccgccgcagcggagcgcgacgcg
gtcgaccgctacaccgcggcgttcctggccgaccggatcggggagcgcttcagcggccgc
atcgccggcgtcagccgcttcggactgttcgtgcggctggacgagagcggcgccgacggg
ctgatccccgccagcaccctgcccgacgacaggtacgaccatgacgaggcggcgcacgcc
ctggtcgggcagcgtacgggccggacgtaccgtctcagcagcccggtcaaggtggtcctg
acggaggccgatccggtcagcggcagcatgctcttccggctggccgactccgactga
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