Alicyclobacillus sp. SO9: GI364_02580
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Entry
GI364_02580 CDS
T10284
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alic Alicyclobacillus sp. SO9
Pathway
alic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GI364_02580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alic03400
]
GI364_02580 (mfd)
Enzymes [BR:
alic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GI364_02580 (mfd)
DNA repair and recombination proteins [BR:
alic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GI364_02580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQE81096
UniProt:
A0A7T5EYF0
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All DBs
Position
592585..596118
Genome browser
AA seq
1177 aa
AA seq
DB search
MAGEEFQALASDLAKNMRDVMVTGVGGSARHLYYAGLYLWMQEHKRIGPAILLVVTHSSS
QAATVYEDLQEFLPEERVLLYPERELSVVDMMAYSPEVLTNRLQVLEALTNRGSCVVVAT
VASVVQPVMNRNYFRESTIEYVVGDRIELNQHVAHLIQMGYERVQIVESKAQFSLRGGIL
DVFPVTADAPLRIELFDDEVDSIRSFDVESQRSLDKRKTAQVGPALDFLVPERKMFEAAE
ALEERLTQRIVTTTNLEVRDRLQAVIGEDIRTLKEGTPFYGELRYEQLMGKDSVQTLLDY
LTKDSLVSLDEPTRLQERQKGLERDYSEWVSAALMRGELVSGTIGEPRYDELWQHPALNS
IHFSTFYRPTKNQRYQSTHTVTAKTMQNFHGQMHLLKAEVERWVRNGIQVLLFASSPERA
ERLDRVLSDYRIDAVKKPRLGPSKQPQILVASLSSGFELPLSHVAAVVETEVFSAKQKTR
RHRKEMSDAERIKSYQELHEGDYVVHINHGIGKYLGIKTLEIEGKHRDYLYLQYAGNDSL
YVPVEQIDQVQRYVGSEDKTPKMYSLGGGEWNRVKQRVSKSVRDIAEDLVKLYASRQAAP
GHGFGKDTGWQSDFEAMFPYEETPDQLTAIEDIKKDMEKGRPMDRLLCGDVGYGKTEVAI
RAAFKAVMDGKQVAVLVPTTVLAHQHFETFKERFAGFPISVDVLSRFRTRTEAKRVVEGV
KEGSIDIVIGTHRLLNKSIKFHDLGLLIVDEEQRFGVTHKERLKQLRTNVDCLTLTATPI
PRTLHMSLLGVRDLSVIETPPENRFPVQTYVVEFNESLIRESIERELGRGGQVYFLFNNV
KSIQSMADRVMRLVPDARVATAHGQMAENELEQIMLDFLEGDIDVLVTTTIIETGLDIPN
VNTLIVSDADRLGLSQLYQLRGRVGRSNRIAYAYFTYQKDKVLTEVAEKRLQAIKEFTEL
GSGFKIAMRDLAIRGAGNLLGAEQHGFINSVGFDMYNDMLSKAVKEVRGDNEKEVPEPTI
ELPIEAYLSDEFIPDAAQKIEMYKKFKFIRSLESADDLEEELEDRYGDLPDASRNLLDIT
RLKSYAVQCDLDAITTEGSEVVLRVRPDASSTINHSRWFQLSKQHAGQYSKRSNGTLQIS
FRIKGMGDREICQRLLRFMSELTEVSQENEEVEEFAK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggccggggaagagtttcaagcattggcgtctgatctggccaaaaatatgcgtgatgtg
atggtcaccggggtagggggcagtgctcgccacttgtattatgcggggctgtatctgtgg
atgcaggaacacaaaagaattgggcccgccatcctgcttgttgtcacacattcgtctagt
caagctgctacggtgtacgaagacttgcaggaatttctaccggaggaaagggttttgctc
tatccagagcgggaactgtcagtcgttgatatgatggcttacagtccggaagttctaacc
aacagacttcaagtccttgaggcgctcacaaaccgcggttcttgtgtcgttgtagctacg
gtggcgtctgtggtccagccggtgatgaacaggaactactttcgagagtcgaccattgag
tatgttgtcggtgaccgaattgaactcaaccagcatgtggcgcacctcattcaaatgggc
tacgagcgggtccagattgttgagtccaaagcccaattttccctccgcggcggcatcttg
gatgttttcccggtgacggcagacgcaccgctccggattgaactgtttgacgatgaagtc
gattcaattcgctcctttgacgttgagagtcaacgttcgctggataagcgcaaaacagca
caggttggaccagcactggattttttggtgcccgagcgaaaaatgttcgaagctgctgaa
gcccttgaagaacgtttgactcagagaatcgtgaccactaccaatctggaagtacgcgac
agattgcaagctgtcataggagaagacatccgcacactgaaggaaggcactcccttttac
ggtgagttgcggtacgagcaactcatgggcaaagactcagtgcagacgttattggattac
ttgacaaaagactccttggtctctctggatgagcccacgcgcttacaggaacgacaaaaa
ggactggaacgagactactccgagtgggtttcggctgcgctgatgcgaggagaacttgtg
tccgggacaatcggagaacctcgttacgatgaactgtggcaacatcctgctctgaattca
attcacttttcgacattttacagacctacgaagaatcaacggtatcagtctacgcacact
gtcacggccaagacgatgcaaaattttcacggccaaatgcacctcctgaaggccgaagta
gaacgttgggtgcgaaacggcatacaagtgttgctgtttgcgtccagcccggaacgcgca
gaacgccttgaccgggtcctgtccgactacagaatcgatgcagtgaagaaaccgcgcctg
ggtccctcgaaacagcctcagattctggtagccagtttgtctagcggttttgagcttccg
ttatcccacgttgcggcagtagttgagacggaagtgttttcagcaaagcagaaaaccaga
agacatcgcaaggaaatgtctgatgcggagagaatcaaaagctatcaggaacttcatgag
ggcgactatgtggttcatatcaaccacggcattgggaagtacctcggtatcaaaaccctg
gaaatcgagggaaaacaccgggattacctgtatttgcagtatgcagggaatgacagctta
tacgttcccgtagaacaaattgaccaagtgcagcgctatgtcggctcagaagacaagacg
ccaaagatgtacagtctaggcggaggtgagtggaaccgggtcaagcaacgtgtttcaaaa
tcggtccgggacatcgctgaggacctggtcaagttgtatgcgtcaagacaagctgcacca
ggtcatggctttggcaaagacacgggctggcagtcagactttgaagccatgtttccgtac
gaagaaacaccggatcagctcactgcgattgaagatatcaagaaggacatggagaaaggc
agaccgatggaccggttgctgtgcggagacgtcggctatgggaaaacggaagtagctatt
cgtgctgctttcaaggctgtgatggacggaaagcaggttgcagtgcttgtcccgaccaca
gtgttggctcatcaacactttgagacgtttaaggagaggtttgcggggttccccatcagt
gtggatgtgttgagccgctttcggaccaggacagaagcaaagcgggttgtcgagggcgtg
aaagagggcagcatcgatattgtcatagggactcaccggctgctgaacaagtccattaag
ttccacgatttaggtctgctcattgttgacgaagagcagcgctttggtgtgacacacaaa
gagcggttaaagcaactccgaaccaatgtggactgcctgacactcacagcaacacccatt
ccgcggacactgcatatgtccctgcttggcgtacgcgatttgtccgtgattgaaacgccg
ccggaaaacagatttccggtacaaacctatgtggtggaatttaacgagagtctcattcgt
gagagcattgaacgagaactgggcaggggcggacaggtttactttctgttcaacaatgtg
aagtccatccaatcgatggcagaccgtgtgatgcgattggtacccgatgcgcgggtggct
acggcccacggccagatggctgaaaacgaacttgagcaaatcatgttggattttctcgag
ggagacatcgacgttttggtgacgacgaccatcattgaaacggggcttgatattccgaac
gtcaacacgctcattgtgagtgatgcggacagacttgggttgtcacaattgtaccaattg
agaggaagagtcgggcgttccaaccggattgcgtacgcctacttcacatatcagaaggac
aaggtccttaccgaagttgcagagaagcggcttcaagccataaaagagtttacggaactt
ggcagcggatttaagattgcaatgagggacctggccattcgcggggccgggaacttgctg
ggagcggaacaacacggtttcattaactctgtagggttcgacatgtacaacgatatgttg
tccaaagcagtcaaggaagttcggggggacaatgagaaggaagttcctgagccaaccatt
gaactgccgattgaagcgtatctttctgatgagtttattccagatgctgcacagaaaatc
gaaatgtacaagaaattcaagtttatacgaagcttggagagtgcagacgatttagaagaa
gaactggaggaccgatacggggaccttccagatgcatccagaaacttactggacatcacg
cgtctcaaaagttatgctgtgcagtgcgaccttgacgcgattacgactgaaggttcagaa
gttgtccttcgggttcggccggatgccagttcaactataaatcacagcaggtggtttcag
ctttccaaacagcacgcaggccagtattcaaaacggtcgaacgggacactgcaaatatct
tttcgtatcaaaggaatgggagacagagagatctgccagcggttgctccgttttatgagt
gaattgacagaggtgtctcaagaaaatgaggaggttgaagaatttgccaagtaa
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