Alicyclobacillus sp. SO9: GI364_05760
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Entry
GI364_05760 CDS
T10284
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
alic Alicyclobacillus sp. SO9
Pathway
alic02020
Two-component system
alic02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alic00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GI364_05760 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GI364_05760 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alic03021
]
GI364_05760 (rpoN)
Transcription machinery [BR:
alic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GI364_05760 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
Sigma70_r4
HTH_IclR
HTH_21
HTH_20
LEM
Motif
Other DBs
NCBI-ProteinID:
QQE79981
LinkDB
All DBs
Position
1284451..1285788
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AA seq
445 aa
AA seq
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MNMELGLYQEQTQRLVMTMQMKQAIQMLQFTMEELDTYLQQQFNENPLLQYRPASVLQET
SYPGSGYKVRQNHSGNSGTLSFEQYARSQETMQTYLSNQVSIQDKPRHILRAAQTLVGCL
DESGYLRGSDEELQSLCKCDKETLEGAIGVLQQCDPVGIGTRSLTQCLLLQAERLPNPLQ
YHATLVISHYLSDVATSRLHHIGKELNLTLTEVQEAVDAIRIMNPRPGMSLGDNNAQYIV
PEVFVRKEGDFFRVFTNADAEPEVHIDKTYQALLAQQSDPAAKRFLQQKLQGVYWLRKAL
VQRQITLARVATAIVDVQQRFFTQGPSGLQPLTLKQVADTVDLHESTVSRTVRGKYMETP
VGVFELKYFFTSELQTSSGNHSVSAHSVKHLIRTLVGREDALHPLSDEALSKQLLEHGIR
VSRRTVAKYRDEMRIPASSKRRRFA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaatatggagcttgggttgtaccaggaacaaacacaaagactggtcatgaccatgcag
atgaaacaggccatccaaatgcttcagtttacaatggaggaattggacacgtatttgcag
caacagtttaacgagaatcccttgctgcagtaccgtccagcgtctgtacttcaggaaaca
tcctaccccggcagcggatacaaggttcgccaaaatcatagtggaaattcagggactctg
tcttttgagcaatatgcacgctcccaagaaacaatgcagacctatttgtctaaccaggtc
tcgattcaggataagccgaggcatattttgagggctgcccagactctcgttgggtgcttg
gatgaaagcggttacttgcggggcagcgatgaggaactgcagtcgttgtgcaagtgtgac
aaggagacactggagggtgctattggggtgctccagcaatgtgatcccgttggcataggt
acccgcagcctaacacagtgcctgctgctccaagccgaacgtttgccgaatccacttcaa
taccatgcgactctcgttatctcacattacctctcggatgtcgccaccagcagacttcat
catattggcaaggagcttaacctaaccctgactgaggttcaagaagccgttgacgctatc
cggattatgaatccaagaccaggtatgagtcttggcgacaataatgcacaatatatcgtg
cccgaggtttttgttcgcaaggaaggggactttttccgggtctttaccaatgcggatgca
gagcctgaggttcacatcgacaaaacctaccaggccctcttggcgcagcagtctgaccct
gcagcaaaacgctttctgcagcaaaaattacaaggtgtatattggctgcgcaaagcgctt
gtgcagcgccaaatcacattggctcgcgttgcgacagccattgtcgatgttcagcagcgc
ttttttacccaaggcccgtcgggacttcagcctttgacactaaaacaggtggcagacacc
gttgatctgcatgagtccacagtcagtcgaaccgtgcgagggaagtatatggaaacgcct
gtcggcgtgtttgagttaaagtacttttttacctccgagttacaaaccagttccgggaat
cacagtgtttccgctcattctgtcaaacacctgattcggaccctggtaggcagggaagac
gccctccatccactgtcggacgaagccctgtcaaaacaactgcttgagcacggcatccgg
gtctctcgtcgtaccgtagccaaataccgtgacgagatgcggattcccgcatcgtcaaaa
cgccggcggtttgcatag
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