Alicyclobacillus sp. SO9: GI364_11100
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Entry
GI364_11100 CDS
T10284
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alic Alicyclobacillus sp. SO9
Pathway
alic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GI364_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alic03019
]
GI364_11100
03009 Ribosome biogenesis [BR:
alic03009
]
GI364_11100
Enzymes [BR:
alic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GI364_11100
Messenger RNA biogenesis [BR:
alic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GI364_11100
Ribosome biogenesis [BR:
alic03009
]
Prokaryotic type
rRNA helicases
GI364_11100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QQE80873
LinkDB
All DBs
Position
2424660..2426237
Genome browser
AA seq
525 aa
AA seq
DB search
MASFKDFNLSRKVQDAINDMGFEEPSPIQASCIPLVLEGKEVIGQAQTGTGKTAAFGVPI
VERAGTDRRVQALVLTPTRELAIQVAGEFRKIAKHKRVRSLPIYGGQSIVHQIRALQQGV
QIVIGTPGRVLDHIRRGTLKLNSVQMVVLDEADEMLDMGFIEDIESILKETPDDRQTLLF
SATFPSEVRRLSARYMKKPEHVTVNRGEMTVPLTDQVYYKVLERSKLESLCRIVDSEEVS
LGIIFCRTKRGVDELVEALLARGYLVDGLHGDLSQAQRDRVMKRFRTSDIELLVATDVAA
RGIDVDNVTHVINYDLPQDPESYVHRIGRTGRAGKKGLAISLATPREFKLLKQIERETGA
KMEAREVPSLADVAERQAEVWRNRIIEAIQGGSLGHFRAILGNVIDEYDPVDVACAALKI
ASAGELEKREEEDYNFGDTGAKPGMVRFFINVGRNANISPSDLVRTISEEAGVPGQTIGK
IDIFDRFTFVEVEQESAPFVYEALRKSRINGSRVNLEPAKPRARR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatttaaggactttaacctgagtcgcaaggttcaggatgcaattaatgatatg
ggatttgaagaaccatctccgattcaagcttcttgtattccattggtacttgaaggtaaa
gaagtgattggacaggcccaaacaggaacaggaaaaacggccgcatttggtgttccaatt
gttgaacgagcaggaactgatcgcagggtgcaagctcttgtgctaacaccaactcgcgaa
ctggcaattcaagtggctggagagttccgtaaaatagcaaagcacaaacgcgttcgcagc
ttgccgatttacggcggacaatccattgttcatcagattagagccttgcagcaaggtgtc
caaattgtcatcggaacccccggccgcgtgctcgaccacattcgacgcggtacgttaaaa
ctgaactctgtacagatggttgtgcttgatgaagccgatgaaatgttggatatgggtttt
attgaagacattgaatcgattttgaaggaaacaccagacgacaggcaaacactgttgttt
tccgctacatttccgtctgaagtgcggcgcttgtcagctcggtatatgaagaagccggag
cacgtcactgtgaaccggggtgagatgacggttccgctcactgaccaagtgtactacaaa
gtccttgagcgcagtaagcttgagagcttgtgtcgtattgtagacagtgaggaagtatcc
cttggtattattttctgcagaacaaaacgaggcgtagatgagctggtagaagctctcttg
gcgcgaggatatctggttgacggtttacatggagacttgagccaagcgcagcgtgacagg
gtcatgaagaggtttaggaccagcgacattgaacttctcgttgccactgatgtggcggct
cgcgggattgatgtagacaatgtcactcacgtgattaactacgatcttccacaagacccg
gaatcttatgtccacagaattggacgtacaggccgagctggtaaaaaaggactggccatc
tccttggcaacaccgcgcgagttcaagctgctaaagcaaattgagcgggaaactggagca
aaaatggaagccagagaggttccgtcgctcgcagacgtcgcggaacgtcaggccgaagtg
tggagaaatcgcattatcgaagccattcagggaggaagtctggggcatttccgcgctatt
ctgggaaatgtcattgacgagtacgatcccgttgacgtagcatgtgcagctctcaaaata
gcctctgcgggagaacttgagaaacgcgaggaagaagactacaacttcggcgatacaggt
gctaaaccaggtatggtgaggttctttatcaatgtcggcagaaacgccaacatcagtcct
tccgatttggtccgtactatctccgaagaggctggagtaccgggacagaccattgggaaa
atcgatatttttgaccgcttcacctttgttgaagtggagcaagaatcagcgccctttgtc
tatgaagcgttacgcaagagcaggattaatggctcgcgtgtcaatctcgaacctgccaaa
cctcgagcgcggcgttag
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