Alicyclobacillus sp. SO9: GI364_22140
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Entry
GI364_22140 CDS
T10284
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alic Alicyclobacillus sp. SO9
Pathway
alic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GI364_22140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alic03021
]
GI364_22140 (rpoC)
03400 DNA repair and recombination proteins [BR:
alic03400
]
GI364_22140 (rpoC)
Enzymes [BR:
alic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GI364_22140 (rpoC)
Transcription machinery [BR:
alic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GI364_22140 (rpoC)
DNA repair and recombination proteins [BR:
alic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GI364_22140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QQE78538
UniProt:
A0A7T5JSI4
LinkDB
All DBs
Position
complement(4694675..4698298)
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFEFMKIGLASSEKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEQKQLLSEKEYRSYREKYGYAFEAGMGAESIKKLLL
EVNPDKEVEMLKEELRTAQGQRRNRAIKRLEVLESFRNSGNEPAWMILEALPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLNMFQCGLPKE
MALELFKPFVMKELVARGLAHNIKSAKRKVERVSPEVWDVVEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL
NPKDGKPVVTPTQDMVLGPYYLTMEKAGAKGKAQIFSSFSEVEMALQQGVVSLHSRIALP
VRGLNKTSFTEKQRDAILITTPGKLMFNNVFPEDFPYLHSGAKSNLLDGTPDDTFVFEKG
VDLRTKIVNRPSPKAIIKKDLGNILGECFRRYGTTSTAEILDRVKQLGFHYSTQAGITIA
VSDIVVPAEKADIIDEAQERQHKLEAQFRRGLITEEEKYISFSQIWTDAKEKVSETLMHS
MDELNPIYMMATSGARGSNSQITQLAGMRGLMANPSGRIIGLPIKSNFREGLTVLEYFMS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREVDCGTDKGLKVSQIRDGSEIIEDL
IDRLEGRVVFEDVHHPETGAVIVAKNEVISTEAASEIVDSGITEVYIRSVLTCRSRHGVC
VQCYGRNLATGQMVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEL
FEARNPKGQAVITEFDGTVTGIREAKDKREIEVEGGSEAKVYSIPYGSRIRVSEGQVIRA
GDELTEGSVDPKEMLRVKGLQGVQMYLLREVQRVYRLQGVDISDKHVEVMVRQMLRKVRV
LDAGDTTLLPGTYVDLFDYEKANEDVLVQGQEPAVARPALLGITKASLETDSFLSAASFQ
ETTRVLTEAAIKGKVDELMGLKENVIIGKLIPAGTGMARYRKLDVLDSTAGEAEQEAEAD
SALTVSE
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgtgaacaactttgagttcatgaaaatagggctcgcttcgtccgagaaaatc
cgttcttggtcacacggcgaggttaagaaacccgagaccattaactatcgaacactgcga
cccgaaaaggaaggcttgttctgcgaaaagatttttggaccgcagaaagactgggaatgt
cattgcggcaaatataagcgtgttcgctataagggtgttgtgtgcgaccgctgcggcgtc
gaagtgacaagggccaaagtgcgccgtgagcgcatgggccacatcgaacttgcggcacct
gtatcgcacatttggtatttcaaaggtattccaagccgaatggggctagtgctcgatatg
tctccgagagcgctggaagaagttatctacttcgcgtcctatgtcgtcaccgatccaggg
gacaccccgcttgagcagaaacaactgctgagcgaaaaagagtatcgctcttatcgtgag
aaatacgggtacgcgtttgaagcggggatgggtgcggaatccatcaagaagcttctcctc
gaagtgaaccctgacaaagaagtggagatgctgaaagaggagctccggacagcgcagggt
caacgcagaaaccgcgctatcaaacggctggaggtgctcgagtcattccggaattcgggt
aatgaaccggcatggatgattctcgaagcacttcccgttattccgccggatttacggccg
atggtgcagttggatggcggacgctttgctacttccgacttaaatgacttgtaccgtcgg
gttatcaacaggaacaatcgattgaaacggttgcttgacttaggagctccggacattatt
gtccagaacgagaaacgcatgcttcaggaagcggtggatgcgctcattgacaatggtcgt
cgcggccgtccggtaacaggacccggcaaccgcccgctcaagtcgctgtcccacatgttg
aaagggaaacagggacgttttcgtcagaacctgctcggtaagcgcgttgactactccgga
cgttccgtcattgttgtcggacccgacttgaatatgtttcagtgcggtctgccaaaggaa
atggcgctcgaactgtttaaaccgtttgtgatgaaagagttggtggcaagagggcttgcc
cacaacatcaagagcgcgaagcgtaaagttgagcgcgtgtcaccggaagtatgggacgtg
gttgaagatgtgattaaggagcatccagttctgttgaaccgagccccgacacttcaccgt
cttggtattcaagcgtttgagccaatcttggtggagggtcgtgcaattcgtctgcatccg
ttggtgtgtacagcttataacgccgactttgacggtgaccagatggccgttcacgtcccg
ctttcggcggaagctcaagctgaggccagactgctgatgttggcagcccacaacattttg
aatccgaaagatggaaagccggttgttacgccaacgcaggacatggtccttgggccgtac
tacttgaccatggagaaggcaggcgcaaaaggcaaagcacagatcttctccagcttctcc
gaggttgagatggcgttgcagcaaggcgtcgtcagcctgcattctcgaattgcgttgccc
gtacggggtttgaacaagacgtcttttaccgagaagcagcgtgacgcaatattgattaca
acccctgggaaactgatgtttaacaatgtgtttcctgaggacttcccgtacttgcattcg
ggagcaaagtccaatttgctggatggcacacctgacgacacgtttgtcttcgaaaaaggt
gtggacctgcgcactaagattgtaaatcgtccgagtccaaaagccattattaagaaggac
cttggcaatattctcggtgagtgtttccgtcgctacggtacaacgtctaccgcagaaatt
ctggacagagtaaagcagcttggtttccactactcgactcaggcgggcatcacgattgca
gtgtcggacattgtcgtgccggcagagaaggctgacatcattgacgaagctcaggagcgt
cagcacaagctggaagcacagttccgacgcggtctgattaccgaggaagagaaatacatt
tccttcagtcaaatctggaccgatgcaaaagaaaaagtttccgagacgctcatgcacagc
atggacgaattgaatccaatttacatgatggccacttccggggcccgcggttccaactcg
cagattactcagttggctgggatgcgcggactgatggccaatccttccggtcggattatc
ggattgccaattaagtccaacttccgcgaaggtctcacggtgttggagtacttcatgtcc
acgcacggcgcgcgaaaaggattagccgataccgctctgcggacggcagactccggctac
ctgaccaggcgtcttgtcgatgtggcgcaagatgtgattgtgcgtgaggttgattgtggt
actgacaagggattgaaggtatctcagattcgcgacggcagtgagattattgaagacctg
attgatcgccttgaaggacgcgtcgtcttcgaggacgtgcatcacccagagactggtgcc
gtcattgttgccaaaaacgaagtcatcagtacggaagcagcatcagagattgtggactct
ggtattactgaagtctacatccgttcggttctgacgtgcagaagtcggcacggtgtgtgt
gtgcagtgctacggtcgcaacttggctacaggccaaatggttgaaatcggtgaagctgta
ggcatcattgctgcccagtctatcggtgagcctggtacgcagctaaccatgagaaccttc
cataccggcggtgtagcaggggacgacatcactcaaggtttgcctcgggttcaggaactt
tttgaagcgcggaacccgaaaggtcaggccgtcatcaccgagttcgacggtacggtcaca
ggcatcagggaagccaaggataagcgtgaaatcgaagtcgagggagggagcgaagcaaag
gtctactccatcccgtacggctctcgcatacgcgtcagtgaggggcaggttatcagagcg
ggtgacgaactcactgaaggctcggtggacccgaaggaaatgctccgcgtcaaggggttg
caaggcgtacagatgtacctcctgcgtgaagtccagcgggtatatcggttgcaaggtgtg
gacatcagcgataagcacgtagaggttatggtccgacagatgttgcgcaaggtgcgggtt
ctggacgctggcgatacaacgctgttgcctggtacgtacgttgacttgtttgactacgag
aaggcgaacgaagatgtgctcgtccaagggcaggagcctgcagtcgcgcgcccggcactg
ctcggtatcaccaaagcatctttggagaccgattccttcttgtctgctgcttcattccag
gagacgacgcgcgttctcacggaggcggccatcaagggcaaggtcgatgaactcatgggc
ctgaaagagaacgtgattattggtaagctgattccggctggcacgggcatggcccgctat
cgcaagttggatgtgctcgacagtacggcaggagaagcggagcaagaggcagaagcggac
tccgcgcttacggtctcggagtaa
DBGET
integrated database retrieval system
