Actinobacillus lignieresii: NCTC10568_00961
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Entry
NCTC10568_00961 CDS
T06678
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alig
Actinobacillus lignieresii
Pathway
alig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10568_00961 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alig03019
]
NCTC10568_00961 (deaD)
03009 Ribosome biogenesis [BR:
alig03009
]
NCTC10568_00961 (deaD)
Enzymes [BR:
alig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10568_00961 (deaD)
Messenger RNA biogenesis [BR:
alig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10568_00961 (deaD)
Ribosome biogenesis [BR:
alig03009
]
Prokaryotic type
rRNA helicases
NCTC10568_00961 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VEB26235
LinkDB
All DBs
Position
1:937240..939099
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AA seq
619 aa
AA seq
DB search
MTTDSLTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN
HQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV
ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
EHLMKKPIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMMLQEKQKLILPPDPEIRAARGESGRRDRDDRRGGRDERRGGREHRENNGVAMDL
YRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQK
ARVLNKQMQMSLLGPAGGVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDR
KKGGFKEKRFNDKGRGRRD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgattctttaactttcgcagaccttggtcttcctcaatctattcttgatgct
gtaaacgacatggggtttgtgacgccttctcctattcaacaagaaacgattcctcatcta
ttagccggccgtgacgtactcggtatggcacaaaccggtagcggtaaaacagcggcattc
tctttacctttattagcgcaaatcgatccgactaaacgtcatccgcaaatgttagtcatg
gcaccgactcgtgaacttgcgattcaagtcgcggatgcttgcgaacaatttactaaaaat
atgaaaggcgttaatgtggttaccgtttacggcggtcagcgttacgacattcaattacgt
gctttaaaacaaggctcacaagtggtggtcggtacgccgggtcgtattcttgaccatatt
cgccgaggtacgttagacctctctgctttgcaatccatcgtattggatgaagcggacgaa
atgcttcgtatgggctttattgacgacgttgaaaccgtgatggcggaattaccggaaaat
caccaaaccgcattattttccgcaaccatgccggagccgattcgtcgcattactcgccgc
tttatgcaagatccgcaagaagtcaaaattcaagcgactcaacgttccgcaccggatatt
acccaaagttattggttagtaaacggcttccgtaaaaacgatgcgttattgcgattcttg
gaagtagaggaatttgatgcggcaatcatctttacccgtaccaaaaccggcacgattgat
attaccgaattatgcgaacgcaacggttatcgcacggcggcattaaacggcgatatgacc
caacaagcacgcgagcagactttagataaattaaaatcaggtcgtttagatattttagtg
gcgaccgacgttgccgctcgcggcatcgatatcgaacgcatcagccttgtagtaaacttt
gatattccgttagatgcggaatcttatgttcaccgtatcggtcgtaccggtcgtgcagga
cgttcggggcgtgccttattattcgtcgaaccgcgtgaacgccgtttactgcgtaacatc
gaacacttaatgaaaaaaccgatcgatgaagtggcgattcctaatcacgaaattctaatg
gcaaaacgtcgcgagaaattcaaagcgcgtgtttctaaacaattagagcatcacgattta
gaaaaataccgcgagttgcttgaagatttattcactgccgaccaagatcacgaagaatta
gcggcggcaatgatgatgatgcttcaagagaaacaaaaactcattcttccgccggatccg
gaaattcgtgcggcacgcggcgaaagcggtcgcagagatcgtgatgatcgtcgcggcgga
cgcgatgaacgccgcggcggtcgtgaacaccgtgagaataacggtgtagcaatggattta
tatcgtatcgaattaggtcgtgaagacggtgtggaagtacgtcatatcgttggcgctatc
gctaacgaaggcgatattagcagccgctatatcggtcacatcaaattacacgatacttat
tctacgattgaattaccgcagggtatgccgaatcatatcgtgcaacactttgcacaaaaa
gcgcgcgtactaaacaaacaaatgcaaatgtctttattaggccctgctggcggtgtaaac
agccaaccgtttgaagaacgtcgcggcggtggtcgtcgtaacgatagaaacgaccgcaat
gatcgtcgtagtgatcgcggcggacgttctgaccgtcgtgaaggcggctttaacgaccgt
aaaaaaggcggttttaaagaaaaacgttttaatgataaaggtcgtggtcgtcgcgactaa
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