Actinobacillus lignieresii: NCTC10568_01642
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Entry
NCTC10568_01642 CDS
T06678
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
alig
Actinobacillus lignieresii
Pathway
alig03420
Nucleotide excision repair
alig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10568_01642 (uvrD)
03430 Mismatch repair
NCTC10568_01642 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alig03400
]
NCTC10568_01642 (uvrD)
Enzymes [BR:
alig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10568_01642 (uvrD)
DNA repair and recombination proteins [BR:
alig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10568_01642 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCTC10568_01642 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
VEB26892
LinkDB
All DBs
Position
1:1618213..1620411
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AA seq
732 aa
AA seq
DB search
MDFSLLLDGLNDKQREAVAAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAV
TFTNKAAAEMRHRIEHTLSSSSHHRLFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDS
EDQQRLLKRLLKLHNIDEKHFPPKHVAWYISAQKDKGKRPKDIEHHNDPNEKKLVQIYQI
YQDACDRAGLLDFAELLIRAYELFRDKPPILQRYQQRFQQILIDEFQDTNNIQYDLIRLL
AGETGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQKAETIRLEQNYRSTGHILATANEL
ISNNEDRLGKNLWTDQGDGDPVEIYCAFNELDEARFVASQIKQWKEDEGSLNECAVLYRS
NSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVINTPPR
GIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRFVELINALEQETEQMP
LFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSKPDEAEEMSDLTAFLT
HASLEAGEAQASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGIFPSGMSFDEGRLQEERR
LAYVGITRAKKKLTISYAELRRLYGKEERHIASRFIAELPEQHIREVRLRGSINRAASFA
QSTPFAKNSAKTTASCLEDNSWKMGQKVQHAKFGQGTIVNVEGSGEATHLQIAFAGNGIK
WLIAKMANLEKI
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatttttctttattattagacggtttaaatgataagcagcgagaggctgtcgctgcg
ccgttgggcaattatttagtattggcgggagccggttccggtaaaacacgggtactgacc
catcgtattgcatggttaatcggtgtagaaaacgtaccggaatcgaatattctagcggtc
acctttaccaataaagcggcagcggaaatgcgtcatcgtatcgaacataccctttcttcc
agcagccatcaccgcctgttcggtatgtgggtcggtacgttccacagcattgccaaccgt
ttgttacgctcgcattatcttgatgccgatttgccgcaagatttccaaattatggatagc
gaagatcagcagcgtttacttaaacgtttgttaaagctgcacaatattgatgaaaaacat
ttcccgccgaaacacgtggcgtggtatatcagtgcgcaaaaagataaaggtaaacgtccg
aaagatattgaacatcataacgatccgaacgagaagaaattagttcaaatctaccaaatt
tatcaagatgcctgcgatcgtgccggtctgttggattttgccgaattattgattcgcgct
tatgaacttttccgagacaaacctccgattttacagcgctatcagcaacgttttcagcag
attttgatcgatgagttccaagataccaacaatattcaatatgacttaatccgtctgctt
gccggtgaaaccggtaatgtgatgattgtcggcgatgacgaccaatcaatttacggctgg
cgtggtgcgcaggttgaaaatattcagcgtttcttaaacgattatcaaaaagcggaaacc
attcgtcttgagcaaaattaccgctcaaccggtcatattctcgctacggcaaacgaattg
atttccaataacgaagaccgtttgggtaagaatttatggacggatcaaggcgacggcgat
ccggttgaaatttattgtgctttcaacgaattggacgaagcccgttttgttgcctcacaa
atcaaacaatggaaagaagacgaaggcagcctaaacgaatgtgcggtgctatatcgtagt
aacagccaatctcgtgtaattgaagaagcattgattcaagccaatattccgtaccgtatt
tacggcggtatgcgtttcttcgagcgtcaagaaatcaaagatgcgttagcctatttacgt
ttaattgcaaatcgccaagatgatgcggcgtttgaacgtgtgattaacactccaccaaga
ggaattggcgaacgcaccttagatacgattcgtcaaattacccgtaatcgccaaataacc
ttatggcaggcgattcaagtggcagtacaggaagaacaactgtccggcagagccgcttcc
gccttactacgttttgtagaattgattaatgcgcttgagcaagaaaccgagcagatgccg
ctatttgaacaaaccgattttgtgattaaaaaatccggtttatacgaaatgtataaacaa
gaaaaaggcgaaaaaggcgaagttcgtatcgagaacttagaagagctagtcaccgctact
aagcaattcagcaagcctgacgaagcggaagaaatgtcggatctcaccgcatttttaact
cacgcctcattagaagccggcgaagcgcaagcctccccacatcaggattatgtcgaatta
atgacgttacattcggcaaaaggcttagaattcccccgtgtatttatggtgggcgtagaa
gaaggaatcttcccgagcggaatgagctttgacgaaggcagactacaagaagagcgccgt
ttggcttatgtcggcattacccgagcgaagaaaaaattaacgatcagctatgccgaactc
agacgattatacggcaaagaagagcgtcatatcgcttctcgttttattgctgaattgccc
gaacaacatattcgcgaagttcgtttgagaggttctatcaaccgtgcggcaagttttgcc
caaagcacgccttttgcaaaaaattcggcaaaaacgaccgcttcttgtttagaagacaat
agctggaaaatggggcaaaaggtgcaacacgctaaattcggacaaggcacgattgttaat
gtggaaggcagcggcgaagcgacccatttgcaaatcgcctttgcaggtaacggtattaag
tggttgattgctaagatggcaaatttagagaaaatttaa
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