Actinobacillus lignieresii: NCTC10568_01661
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Entry
NCTC10568_01661 CDS
T06678
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alig
Actinobacillus lignieresii
Pathway
alig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10568_01661 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alig03400
]
NCTC10568_01661 (mfd)
Enzymes [BR:
alig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10568_01661 (mfd)
DNA repair and recombination proteins [BR:
alig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10568_01661 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEB26905
LinkDB
All DBs
Position
1:complement(1633883..1637332)
Genome browser
AA seq
1149 aa
AA seq
DB search
MTFHFNLNLPEIGGKYQDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRLEK
ALTQFSKLPVSVFPDWETLPYDNFSPHQDIISARLSALFHLQKGNKQIFLLPISTLLQKV
CPPSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAE
SPFRLDFFDDEIDSIRTFDADSQRTIAEINEINLLPAHEFPTDSNGIEHFRSKFREQFGE
IRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFDYLAENTLFITFDGIAEKAEQFHK
DTEQRYESRRVDPMRPLLPPDKLWFSVDEVNRHLKGYPRLTLSAEKVRKSAAKQNANIEK
LPELAINSQLKDPFDAFNKFRSKFDGRILFSVESEGRRETLLELLAPLKLKPKQVKSFAE
IDSQISLIISPLDQGFIIENTSGQNLAIICETDFLGEKVQTKRAEKNRKTVNPDTLIRNL
AELKIGQAVVHLENGVGRYAGLTVLDAGGIKAEYLVLLYANEAKLYVPVASLHLISRYIG
GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFAFAYDRDGFMQFS
HTFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVENHKQVAV
LVPTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLL
QEDVQFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLS
VIASPPARRLTIKTFVRQHDDLIVKEAILREILRGGQVYYLHNDVATIENCATKLAELVP
EARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLA
QLHQLRGRVGRSHHQAYAYLLTPPPKALTKDAQQRLEAISSIDNLGAGFVLATHDLEIRG
AGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPTLEEITQNQVDIELRIPALLPD
DYVPDVNMRLSFYKRIASAESVEALKDLKVELIDRFGLLPEVTKNLFQITQLRHLATPLG
LKKVDAGINGGYLEFKPSAQPDPMKFLQLIQSDKSVYKFEGAQKFRFNLPLADNAERLEF
VSELIEKLV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacattccatttcaatttaaatctgccggaaatcggcggcaaatatcaagatcaccaa
acgctcggtaatctaatcgggcacgccgatacgcttgttattgcgcaagctacggaacaa
tttaacggtttaagcgtggtagtcacgccggatacccgtaccgcattacgccttgaaaaa
gccttaacgcaattcagcaaattaccggtttcggtttttccggattgggagacactaccg
tacgataatttttcaccgcatcaagatattatttccgcgcgcctttcggcactgtttcac
ttacagaaaggcaataaacagatttttctgttgccaatcagcacccttttacaaaaagtt
tgtccgccgagttatctcgcaaataatgtactactgattaaaaaaggcgatcgcttttca
attcaatcgttacgtttacagctggaaaatgccggttatcgtgcagtggaacaagtgttg
gaatacggcgaatatgccgtacgtggcgcattacttgacctctatccgatgggagcggaa
agcccgttccgcttggatttttttgatgatgaaatcgattcgatccgcactttcgatgcg
gacagtcagcgtacgatagccgagatcaacgaaattaatttactaccggcacacgagttc
ccgactgatagtaatggaatcgagcattttagaagcaaatttcgtgaacaattcggtgag
attcgtcgtgaaccggagcatatttatcagcaagtcagtaaagggatcttaaacgctggg
attgaatattggcagccgcttttctttgaagaaatggcaagtctatttgattatttggcg
gaaaataccttatttattaccttcgacggtattgcggaaaaagcagaacagttccacaag
gatactgaacaacgctatgaaagtcgccgagtcgatccgatgcgtccgctactgccgccg
gacaaattatggttctcggttgatgaagtcaatcgtcatctgaaaggttatccacgcctg
acattaagtgcggaaaaagtcagaaaatcggcggctaaacaaaatgcgaatattgaaaaa
ttgccggaattagcgattaactcgcagttaaaagatccgtttgacgcatttaataaattc
cgtagcaaattcgacgggcggattttattttcagtagaaagtgaaggccgccgagaaact
ttgctcgaattacttgcgccgttaaaactcaagccgaaacaagttaaatcgttcgcagaa
attgattcgcaaatttccctgattatttcaccgcttgatcagggctttatcattgaaaat
acaagcggtcaaaatttagcgattatttgcgaaacggatttcttgggcgaaaaagttcaa
acgaaacgggcggagaaaaatcgtaaaacggtcaatccggatacgctaatccgtaacctt
gcggagctgaaaatcgggcaagcggtggtgcatttggaaaacggtgtcgggcgttatgca
gggctaaccgtactggatgcaggcggaattaaagcggaataccttgtgttgctttatgca
aacgaggcgaagctctatgtgccggtggcatcgctacatctgatttcccgttatatcggc
ggtgcggatgaaactgcaccgttacacaaactcggttcggaagcatgggcgaaaacacgc
caaaaagcggcggagaaaatccgagatgtggcggcggaattacttgatgtgtatgcgaaa
cgagaatcgcaaaaaggctttgcgtttgcctacgatcgagacggctttatgcagtttagc
cataccttcccgtttgaagaaaccgaagaccagaaaaccgcaatcaatgcggtcattagc
gatatgtgcttgccaaaagcaatggatcgtttggtttgtggagatgtcggcttcggtaaa
accgaagtggcgatgcgagcgactttcttagcggttgaaaaccataaacaagttgccgtg
cttgtgccgaccacgctattggcacaacaacatttcgagaatttcaaagaccgttttgcc
aactatccgattaatgttgaggtgctttctcgttttaaaaccgctaaagagcaaaaagcg
attttggaaaaggtggcggaaggcaaagtggatattctagtcggcacgcacaaactgcta
caagaagacgtgcaattccgtgatctcggtttactcgtgattgatgaagagcatcgtttc
ggcgtgcgtcaaaaagagaaaatcaaacaattacgggctaacgtcgatattctcacgctc
accgcaacgccgatccctcgtacgctgaatatggcgttaaacggcatgcgagatctttcc
gttattgccagtccgcccgctcgtcgtttgacgattaaaacctttgtacgccaacacgat
gatttgatcgttaaagaagcgattctgcgtgaaattctacgtggcggtcaggtatattac
ctgcacaatgatgtggcgactatcgaaaactgtgccaccaaattagcggaactcgtgccg
gaagctcggattgtgatcggacacgggcaaatgcgtgaacgtgaattggagcgtgtgatg
agcgatttttatcatcagcgttttaatttattagtgtgttcaaccattatcgaaaccggg
attgacgtgccgaccgctaacacgattattatcgagcgtgcggataaattcggtttggcg
cagttacatcaattgcgtggacgtgtcggacgttctcatcatcaggcttacgcatattta
ttaacaccgccgccgaaagcactaactaaagacgctcaacagcgtttggaagcaataagt
tcgattgataacctcggtgcgggctttgtattagctactcacgatttagagattcgtggt
gcgggcgaattactcggttcagaacaaagcgggcaaatcgaaagcatcggcttctcgctc
tatatggatctgctcgaaaatgcggtaaaagccttacaagaagggcgtgaaccgacttta
gaagaaatcacccaaaatcaagtggatatcgagttacgcataccggcattgctaccggac
gattatgtaccggatgtgaatatgcgtttatcgttctataaacgtatcgcctcggcagaa
agtgttgaagcattgaaagatctgaaggtcgaattgattgaccgtttcggattattaccg
gaagtaacgaaaaatctgttccaaattactcagcttcgtcatttggcaacaccgctcggc
ttgaagaaagttgatgcggggattaacggcggctacttggaatttaaaccaagcgctcaa
cctgatccgatgaagttcttacaattgattcaatcggataagagcgtttataaatttgaa
ggggcgcaaaaattccgttttaatttaccgcttgccgataatgcggaacgattggaattt
gtctcggaactgattgaaaaattggtttga
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integrated database retrieval system
