Actinobacillus lignieresii: NCTC10568_01781
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Entry
NCTC10568_01781 CDS
T06678
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alig
Actinobacillus lignieresii
Pathway
alig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10568_01781 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alig03019
]
NCTC10568_01781 (rne)
03009 Ribosome biogenesis [BR:
alig03009
]
NCTC10568_01781 (rne)
Enzymes [BR:
alig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC10568_01781 (rne)
Messenger RNA biogenesis [BR:
alig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10568_01781 (rne)
Ribosome biogenesis [BR:
alig03009
]
Prokaryotic type
rRNA processing factors
NCTC10568_01781 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
VEB27017
LinkDB
All DBs
Position
1:1749226..1752213
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AA seq
995 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIAL
SILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETP
HFSVYRLRENEVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEPVITVESVLQSS
ELNLQPAPTPVEPAKPSLLSRLIAKVKSFFVPEEKAEEKPKPKARNQRDRRNRRERPNRA
DRQERKQTQAQDEQKAQRQERNQERNEAKKARRQVVEEVAGVQETQTEQRSNKDNATTER
RQRRDLRKKVRVENVEASVATTEPSTQPIEEKVQNIAQIQPLVAQETQPETVNEERQDVR
ENGRQRRLPRHLRVGNQRRRDNNNRKENVVAAMPLAAAVASPEMASGKIWVKFSEPVSTN
KPNSKAEEKPRFLSVDEMLEQQTTEVNEPIVESNIENNSASSVAPVVGFIKQQSDRDLVK
ENKARLHHQVEENEQADEQLVEKAMAKHVAPLGGFVSQHSDRDLVKEKNERVQKFQAQAT
QAPAIGNATAEAISVPVSNYQSDYNFNGRLGTFSRVMHTKAEMTVASAPEKALETVTVNE
WTQSKYYFYGKGFGGHSSAVSHVHSAPRVANTDHE
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaacgcaaaaagaagagttgcgtgttgcgctcgttgac
gggcaacgtttattcgatttagatatcgaaagcccgggacacgaacaaaaaaaatccaat
atctacaaagggaaaattacccgtatcgagccaagtcttgaagccgcattcgtagattac
ggtgcggaacgtcacggtttccttccgttaaaagaaatctctcgcgaatacttccctgcg
gattacgtattcaacggtcgcccgaatatcaaagatattatcaaagaagggcaagaagtg
atcgtgcaagtgagtaaagaagaacgcggcaataaaggcgctgcgctcaccacatttatc
tcgcttgccggtagttatttagtgttaatgccgaataacccgcgtgcgggcggtatttct
cgccgcatcgaaggcgacgaacgcttggaattaaaagaagcgttagattgcttggacgtg
ccggaagacgtcggtttaatcgtacgtactgccggtgtgggtaaatcgccggaagaactt
caatgggacttaaaagttctgttacatcattgggaagcgatcaaaaaagcagcggaatct
cgtcctgcaccattccttatccatcaagaaagtgatgtgattgtgcgtgcgatccgtgat
tacctccgccgtgatatcggtgaaatcttaattgataacaaaaagatcttcgaaaaagca
aaaaatcatattcgtttagtgcgccctgattttattaatcgtgtgcgtttatacgaaggc
gaagtgccgctattcagccattatcaaatcgaatcgcaaatcgaatcggcgttccaacgt
gaagtgcgtttaccgtccggtggttcaatcgttatcgacgtgaccgaagcattaacggcg
attgacattaactcgtcacgctcaacccgcggcggcgatatcgaagaaactgcgttaaat
accaacttagaagcggcggacgaaatcgcacgtcagttacgtttacgcgacttaggcggt
ttgattgtcatcgattttatcgatatgactccggttcgtcaccaacgcgaagtggaaaac
cgtatccgtgaagcgacacgccaagatcgtgcacgtattcagttcagtcgtatttcacgt
ttcggcttattagaaatgagccgtcagcgtttaagcccgtcactcagcgaagcatcaagc
catgtatgtcctcgttgccaaggtacgggtaaagtacgtgataacgaatctatcgcactt
tcaattttacgtttattggaagaagaggcgatcaaagaaaataccgcacaagttcacacc
atcgtgccggtacaaattgcctcttacttactcaacgaaaaacgtaaagcgatttcaagt
attgagaaacgccacgatgtacaagtggtggttgtaccgacagaaagcatggaaacaccg
catttcagcgtctatcgtttacgtgaaaacgaagtgctaccgacactgagttatgattta
gcgaagcattatcatgatcgtgaagaagatactcaactaaatacacatacagtttcagaa
gaagtattagtaacacgtaatgagccggttattacggtggaatccgtattacaaagttcc
gagttaaatcttcaaccggcaccgacaccggtagagccggcaaaaccttcgctcctaagt
cgcttaattgcaaaagtgaaaagtttcttcgtacctgaagaaaaagcggaagaaaaaccg
aagccgaaagcacgtaaccagcgtgatcgtcgtaatcgtcgcgaacgtccgaatcgtgct
gatcgtcaagagcgcaaacaaacgcaagcgcaagacgagcaaaaagcgcaacgtcaggaa
cgtaatcaagaacgtaatgaggcgaaaaaagcgcgccgccaagtagttgaagaagttgct
ggtgttcaagaaacacaaacggaacaacgttcgaacaaagacaacgcgacgacagaacgc
cgccaacgtcgtgatttacgtaaaaaagtacgcgtagaaaacgttgaagcatcggttgcc
accactgagccgagtacgcaaccgattgaagaaaaagtgcaaaatatcgcgcaaattcaa
ccgcttgtcgcacaagaaactcaacctgaaacagttaatgaagaacgtcaagatgttcgt
gaaaacggtcgtcagcgtcgtcttcctcgtcatcttcgcgtaggtaaccaacgccgtcga
gacaacaataaccgtaaagaaaatgttgtggcggcaatgcctttagcggcggcggttgca
tcgccggaaatggcaagcggtaagatttgggtgaaattcagcgaaccggtttctacaaat
aaaccgaatagcaaagcggaagaaaaaccacgtttcttatcggtagatgaaatgcttgag
caacaaactacggaagtaaacgaaccgattgtagaaagcaatatcgagaacaatagcgca
agttccgttgcgccggttgtcggctttattaaacagcaatcggatcgtgatttggttaaa
gaaaacaaagcgcgtttacaccatcaggttgaagaaaacgaacaagcggacgaacaactg
gttgaaaaagcaatggcaaaacacgttgcgccgttaggcggttttgtttctcaacattct
gatcgtgatcttgttaaagagaagaacgaacgagtacaaaaattccaagcgcaagcgaca
caagccccggcaattggaaatgctacggcggaagctattagcgtgccggtttccaattac
caaagcgactataactttaacggtcgtttaggtacattctctcgagtaatgcacactaaa
gccgaaatgacggttgcttctgcgccggaaaaagcgttggaaacagttacggtaaacgaa
tggactcaatcaaaatactatttctacggaaaaggttttggcggacattcaagtgcggtg
agccatgttcactccgcccctcgtgttgccaatacggatcatgaataa
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