Aliiglaciecola sp. LCG003: QR722_02100
Help
Entry
QR722_02100 CDS
T09143
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QR722_02100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alii03021
]
QR722_02100 (rpoC)
03400 DNA repair and recombination proteins [BR:
alii03400
]
QR722_02100 (rpoC)
Enzymes [BR:
alii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QR722_02100 (rpoC)
Transcription machinery [BR:
alii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QR722_02100 (rpoC)
DNA repair and recombination proteins [BR:
alii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QR722_02100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WJG09849
LinkDB
All DBs
Position
494799..498980
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLASPDMVRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLTEEEYLDSLEEHGDEFEAKM
GAEAVFELLKVLDVDADVVSMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREAPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDRVNGLGEGMVFTSPHEAEKAYRTG
NAELHARVKVRITEYDVDESGNKKEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNTCYRVLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPDAKKDIIEAAEEE
VFEIQEQFQSGLVTAGERYNKVIDIWSRANEDVAKAMMSNLSKEQVLNRDGVMEEQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINNTDCGTFEGVKMTPLIEGGDVVEPLRERVL
GRVVAEDVVKPGSNDILVERNVLLDEELVDMLEANSVDQILVRSVITCDNDFGVCARCYG
RDLARGHMVGYGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTNGTLKL
HNAKYVRNADDKVVIVSRSTEITIIDDQGREKERYKVPYGAILTVDDNATIAAGDVVANW
DPHSHPIITERASKITFADIDDSNTEMQQDELTGLTRIVVKDLTKANAKEPKLILESDEV
GLQEIRLPSFTTIEATDGKMVAVGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEVSGTIGFGKETKGKKRLVITPKEGDHYEEMIPKWRQLNVFEGESVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCMITHSGDTQFL
EGEQVEVANVKIANREMEKQGKFPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDELRGLKENVIVGRLIPAGTGFSYHQNRAKLRAAKMTVEEPSVSASDAEQALTE
ALNAETGNSSSGE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaagcaacagaacaaaaccgaagaattcgataatatt
cgtatcggtcttgcttctccggacatggtccgatcgtggtcttttggtgaggtgaaaaaa
cctgaaaccatcaactaccgtacatttaaaccagagcgtgacggacttttctgtgcccgt
atctttggtccggtaaaagactacgaatgcttgtgcggtaagtacaagcgccttaagcat
cgtggcgtaatttgtgaaaagtgtggcgtagaagttaccttaaccaaagttcgtcgtgag
cgtatggggcacattgaactggctagcccagttgcacacatttggttcctgaaatcttta
ccgtctcgtattggcttaatgctagatatgacattacgtgacatcgagcgtgtattgtac
tttgaatcttatgttgttaccgaacctggaatgacaacattagagcgttcacagttgctt
acggaagaagaatatttagattctttggaagagcacggtgacgaattcgaagccaaaatg
ggtgccgaagcagtattcgaattattgaaagtactcgacgtagacgccgatgtggtatct
atgcgcgaagagttgccttcaatcaattctgaaactaaacgtaaaaaaatcactaagcgt
ttgaagttacttgagtcattccagcaatctggtaataagccagagtggatgattatgaca
gttctgccagtattaccacctgacttacgtcctttggtaccgctagatggtggccgtttt
gctacttcagatttgaacgatttataccgtcgcgttatcaaccgtaacaaccgcttgaag
cgtcttcttgatcttgctgcacctgatatcatcgtgcgcaacgaaaaacgtatgttacaa
gaagctgttgatgcgttgttagataatggtcgtcgtggtcgcgctattactggttctaac
aaacgtcctcttaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgattactctggtcgttctgtaatcactgttggtcctaca
ctacgccttcatcaatgtggtttaccgaagaaaatggcacttgaattattcaaaccattt
atctatggaaaattggaagcacgtggtttagcaacaactatcaaagctgcgaagaaattg
gtagagcgagaagctccggaagtatgggatgttttggatgaagttatccgcgaacaccct
gtattactaaaccgagcaccaacacttcacagattaggtattcaagcttttgaacctatt
cttatcgaaggtaaagcgattcagttgcacccattagtatgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgttcacgtacctttgactattgaagctcagcttgaagca
cgtgctttgatgatgtctaccaacaacattttgtcacccgcaaacggtgagcctatcatc
gttccttcacaggacgttgtattaggtttgtactatcttactcgtgaccgtgtaaatggt
ttgggtgaaggtatggtatttaccagcccgcacgaagctgaaaaagcataccgtactggt
aatgctgaattgcacgcccgtgtgaaagtacgtatcactgaatatgatgttgatgaaagc
ggaaacaagaaagaaaaagtaacattgacagatactactgttggtcgcgcgattttctct
ttgatcctgcctaaaggtttgccgtttgaaattatcaaccaagccatgggcaaaaagcag
atctctcgtctactcaacacctgttaccgtgtactaggtttgaaagacaccgttatcgct
gccgaccaaatcatgtataccggtttccattacgcgatgatcgcgggtgcgtctgttggt
atcgatgacatggttatcccagatgccaagaaagatattatcgaagccgctgaagaagaa
gttttcgaaattcaggagcagttccagtcaggtcttgttactgctggtgagcgatacaac
aaagttatcgatatttggtctcgtgcaaacgaagatgtagctaaggcgatgatgtccaac
ttgtctaaagaacaagtgttaaatcgcgatggcgtaatggaagagcaagattctttcaac
tctgtgtttatgatggccgactctggtgctcgtggtagtgccgctcagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttcaatcatcgaaacgccaattact
gcaaacttccgtgaaggtttgaacgtacttcagtactttatttctactcacggagctcgt
aaaggtttggccgatacggcattgaaaacagctaactctggttacttaacccgtcgtttg
gttgatgtggcgcaagatttggttatcaacaatacagattgcggcacattcgaaggtgtg
aaaatgacaccgctaatcgaaggtggtgacgttgtagagccattgcgcgagcgcgtattg
ggtcgtgttgtagccgaagatgtagttaagccaggttcaaacgatattctagtcgagcgt
aatgttttactagacgaagaattggttgatatgttggaagccaattctgttgaccaaatc
ttagtacgttcagttatcacttgtgacaacgattttggtgtgtgtgcaagatgttacggt
cgtgatctagcccgtggacatatggttggttacggtgagtctgttggtgttatcgctgca
cagtcaatcggtgagcctggtacacagcttaccatgcgtaccttccacatcggtggtgcg
gcatcaagagcttctgcagaaaatagtgtacaagttaaaactaacggtacattgaaactg
cataacgccaagtatgttcgcaacgcagacgacaaagtagttatagtttcacgttcaact
gaaatcaccattattgatgatcaaggtcgtgagaaagaacgttataaggttccttacggt
gccatcttaacggtagatgacaatgcaacaattgcagctggtgacgttgtcgctaactgg
gacccgcattctcatcctattatcactgaacgtgcttcgaagatcacttttgccgatatc
gatgactcaaatactgagatgcagcaagacgagttaactggtcttacccgtatcgtcgtt
aaagatttgactaaagcgaacgccaaagagccaaaacttatcttggaaagtgacgaagtc
ggtcttcaagaaatacgcttacctagctttactaccattgaagcaacagacggtaagatg
gttgcggtaggtgacgtgctagcgcgtattcctcaggagagttcgaagactcgtgatatt
accggtggtttgccacgtgttgctgatttgttcgaagcacgtaagcctaaagagcctgca
atcttagctgaagtatcaggtacgattggctttggtaaagaaaccaaaggtaagaaacgc
ttagtgatcacacctaaagaaggtgatcattacgaagagatgattcctaagtggcgtcaa
cttaacgtgtttgaaggtgaatctgtagaaaaaggcgaagtaattgccgatggaccagag
tctccacatgatatcttgcgcttgcgcggtatcagtgcagtggctaactacattgttaat
gaagttcaagaagtataccgtctacaaggtgtaaaaattaacgataagcacattgaggtt
gttattcgccaaatgttgcgtaagtgtatgattactcattctggcgatactcaattcttg
gaaggcgagcaagtagaagttgctaacgttaagattgctaaccgtgagatggaaaaacag
ggtaaattccctgcccagtatgaaacgcagttgctaggtataaccaaagcatcgctttct
acagagtctttcatttcagcagcatcgttccaggagaccactcgtgttcttactgaagcc
gctgttcaaggtaaagaagatgaattacgtggcttgaaagagaatgtaatcgttgggcgt
ctaatcccagctggtaccggtttctcataccatcaaaatcgcgctaagttaagagctgcg
aagatgacagtagaagaaccttccgtttctgcatctgatgctgaacaagcactaacagaa
gcgcttaacgctgaaacgggcaatagctcatcaggcgaataa
DBGET
integrated database retrieval system
