Aliiglaciecola sp. LCG003: QR722_02205
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Entry
QR722_02205 CDS
T09143
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR722_02205 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alii03019
]
QR722_02205 (rhlB)
Enzymes [BR:
alii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QR722_02205 (rhlB)
Messenger RNA biogenesis [BR:
alii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QR722_02205 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WJG09870
LinkDB
All DBs
Position
complement(526877..528136)
Genome browser
AA seq
419 aa
AA seq
DB search
MQTTHLTETHFSDLPIHEDVLKALTEANFLHCTPIQALSLPHLLDGQDIAGQAQTGTGKT
IAFLVATFHRLLTHPNESKKQPRAIIMAPTRELAVQIYNDAELLSKHTGISLGLIYGGEG
YQSQRESLQSGVDIIIGTTGRIIDYYKQNVFSLENIQVAVLDEADRMFDLGFIKDIRYMF
RRMPEPTKRLSMLFSATLSYRVQELAYEHMNNPTHVEVVHDKVTASRIQEELFYPSDEDK
MLLLLTLLEDEWPEKAIVFANTKHVCEKLSDWLEADGHRVGLLSGDVPQRKRLKILEDFG
KDKIDILVATDVAARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAISFACEK
YALNLPAIETYIGRTIPVSNYDQSSLLEDVKVPKPQFKKRLQSGKTYQKRPSNHQHKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaacacatttaactgaaacacatttttctgatttgcccatccatgaggatgtt
ttaaaagcattaacagaagcgaatttcttacattgcactcctatccaggcattgagtcta
cctcatttgttagatgggcaggatattgctggacaggcacaaacgggaaccggaaagact
attgctttcttggttgccacatttcatcgtctgttaacacatcctaatgagtctaaaaag
caacccagagccattattatggcaccaactcgcgagttggctgtgcaaatttataacgat
gctgaattactcagtaagcacacaggcatatcgcttggtttaatttatgggggcgaaggc
taccaaagtcaacgggaatctttacaatccggtgttgatatcataattggtaccactggc
cgcatcattgattattacaaacagaacgtgttttcactagaaaatattcaagtggccgtt
ttagatgaagccgaccgcatgttcgatttgggctttattaaagatatcagatatatgttt
agacgcatgcctgagccaacgaaaagattaagcatgttgttttcagcaaccttgtcgtat
cgtgttcaagagcttgcctacgaacatatgaacaaccctacccacgtagaagttgtccac
gacaaagttaccgccagtcgaatccaagaagagctattctatccgtcagacgaagacaaa
atgttactgttactgacgctcttagaagatgaatggccggaaaaggctatcgtgtttgcg
aatactaaacatgtatgtgaaaaactcagcgactggttagaagcggatggccaccgtgtt
ggtttactcagtggcgacgtcccccagcgtaaacgtctgaaaatattagaagattttggt
aaagataaaatcgatatattagttgccaccgatgtagcagcccgaggcttgcacatcgaa
aaagtgactcatgtatttaattttgacttacccgacgatgctgaagattatgtacaccgt
atcggtcgaacaggacgcgctggtaaaagcggtcacgcgattagctttgcttgtgagaag
tatgcactgaatttacccgctatcgaaacctatatcggtcggaccattccggttagcaat
tatgatcaatcgtctttgcttgaagatgtaaaagtgcctaagccacagtttaaaaaacgt
ctacaaagtggtaaaacatatcaaaaacgtccaagcaatcaccaacataaaaggcgttaa
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