Aliiglaciecola sp. LCG003: QR722_04320
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Entry
QR722_04320 CDS
T09143
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR722_04320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alii03019
]
QR722_04320
Enzymes [BR:
alii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QR722_04320
Messenger RNA biogenesis [BR:
alii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QR722_04320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_30
P-loop_SecA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WJG10268
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All DBs
Position
1035014..1036282
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AA seq
422 aa
AA seq
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MSFRSLGLCNALLKAVAEQGYATPSPIQVEAIPAVLSGRDLMAVAHTGTGKTAAFCLPVM
QLLSEGSSPQAKKVRGLIITPTRELAAQVSASLERYSRHMNIRSAVVFGGVRIEPQISLL
QEGLDMLVATPGRLIDLYNQQAFNFDQLEILVLDEADRMLDMGFVDDIRHIQSLLPSNRQ
TLMFSATFSKQIKSLATGMLDNPLLLEVTAANSTVDTVKQLIYSVDKARKSEALIQLIKN
NDWHQILVFSRTKRGADNLVTQLKNAAISADSIHANRTQHARTLALDGFRNGSIKVLVAT
DIASRGIDVDQLPCVINFDLPYVPEDYVHRIGRTGRVGSTGLAISLFSEDESKQLQTIER
VIGRKLERQIIPGFAPSQKAPVDSSDDDLYGNFEPDPKPRRRDQPQGWAGHGRKSTNKKR
KR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttcgatcgttaggcttgtgtaatgcgctattgaaagcggttgcagaacaaggt
tatgcaacgccatcaccgatacaggttgaagctattccggcggtgcttagtggtcgtgat
cttatggcggtggctcacaccggcacaggtaaaacggccgctttttgtttgccggtgatg
cagctactgtctgaaggctcaagtccacaagcgaaaaaagtccgtgggttaatcattacg
ccgacccgagagcttgctgctcaggtatccgcaagccttgaacgctacagccgtcatatg
aatattcgctcagcggtcgtgtttggtggtgtgaggattgagccgcagatatccttactg
caagagggtttagatatgctggtcgctacgcccggtcgtttgattgatctgtataatcag
caggcttttaactttgatcagcttgagatattggtcttggatgaggctgatcgcatgttg
gatatgggctttgtcgacgacatccgtcatatccaaagtctgttgcctagcaaccgtcaa
actttaatgttttcagcgacattttctaaacagataaaatctcttgccacaggcatgtta
gataatccacttttgcttgaagtgaccgccgccaacagtacggtcgatacggttaaacag
cttatatattctgtagacaaagctcgcaaaagtgaggcgctgatccagctgattaagaac
aatgattggcatcaaattctggtgtttagtcgcaccaagcgtggcgcagataatttggta
acccagctgaaaaacgccgctatcagcgccgactcaatccatgcaaacagaacccagcat
gcgcgcacacttgctttagatgggtttagaaacggtagtattaaggttttggtcgccact
gatattgcctctcggggcattgatgtagaccaactgccttgtgtgattaactttgatctg
ccctatgtacctgaagattatgtacatcgcataggtcgtaccggtcgtgttggcagcaca
ggcttagcgatatccttattcagtgaggatgaatccaaacagttacagacaattgaacga
gtgattggccgtaagttagagcgtcaaatcatcccaggttttgcgcctagccaaaaagcg
ccagtagactcatcagatgatgacctatatggtaattttgagccagatcctaaacctaga
cgtcgagaccaacctcaggggtgggcaggccatggcagaaagtcgaccaataaaaagcgt
aaaaggtag
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