Aliiglaciecola sp. LCG003: QR722_16660
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Entry
QR722_16660 CDS
T09143
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR722_16660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alii03019
]
QR722_16660
03009 Ribosome biogenesis [BR:
alii03009
]
QR722_16660
Enzymes [BR:
alii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QR722_16660
Messenger RNA biogenesis [BR:
alii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QR722_16660
Ribosome biogenesis [BR:
alii03009
]
Prokaryotic type
rRNA helicases
QR722_16660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WJG08942
LinkDB
All DBs
Position
3832323..3834074
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AA seq
583 aa
AA seq
DB search
MTTNVDITFKDLNLPEALLQAIEKVGYEKPSPIQAESIPLILAGHDLLGQAQTGTGKTGA
FALPMLANLDIDKDYTQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRGTLKLDQLRFLVLDEADEMLRMGFIDDVEWILSHAPA
TRQTALFSATMPAPIKKITQRYLNNPKHVKIESKVSTASTIRQRYCQIAGHHKLEALTRI
LEVEEFDGVIIFVRTKTATVELADKLSARGYDVEPLNGDIAQNARERTVDKLKQGKIDIL
VATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFA
IEKATNQAIESMPIPSISEINETRLTRFKASVIEAMEDDSIETLIPIVESIQQQTEASPE
KIMAALAKIAQGDEPLILREGDRPDLNAKPSHSDRERDRAPRGAGRERGPRDRDDRRGAP
AKPRNRSSKPDEGMQRYRIDVGHTHGAKPGNIVGAIANEANISSKNIGAIEIFDTFSTVD
LPQGMPADTFGVLQKTRVAGQRLGLREWKDEPPKRKPRKTDKS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaatgtagacatcacttttaaagacctaaatttgcctgaagctttattacag
gcaatcgaaaaagtaggttacgaaaaaccctctcctattcaagctgagagtattccatta
attttggcaggacacgatctgttaggccaagcacaaacaggtacgggtaaaaccggtgct
ttcgctcttccaatgctagctaatttggatatcgataaagactatacccaattactggtt
ttggcgcctactcgtgaactagctattcaggttgcagaagcttttcaagtctatgcaagt
ttttctaaaaaaattcgcgtgttaccaatttatggcggccaatcttacgataaccagatt
cgtcagcttaaacgtggcgttcaagtagtcgtaggtacccctggacgggtaattgaccac
attaaacgtggaacattaaaattagaccagttacgtttcttggtactggatgaagctgat
gaaatgttacgtatgggtttcattgacgatgttgagtggattttgagccacgctccagca
acacgtcaaacagcgttattctcagcgacaatgcctgcgccgatcaaaaagatcacgcaa
cgttatttgaataatcctaaacatgtcaaaatcgagtctaaagtcagcactgcaagcaca
attcgtcagcgttactgccaaattgcagggcatcataaacttgaagccctaacccgtatt
ttggaagttgaagagtttgatggcgtcattattttcgtgcggaccaaaactgctacggtt
gaattagccgacaagttgtctgctcgtgggtacgacgtagagccgttaaacggtgacatc
gcacagaatgcacgtgaaagaactgtcgataaattgaagcaaggcaaaatcgatatattg
gttgcgaccgatgttgtagcccgaggcctagacgtagaacgtgtcagtcatgttattaac
tatgatgtgccttatgacacagaatcttatgttcatagaattggaagaactggacgtgct
ggcagacaaggtgatgcaatattgtttatttcacatcgtgaaaagcgcatgttgttcgcc
attgaaaaagccacgaatcaagctattgaatctatgccgattccatctatatcggaaatc
aatgaaactcgtttaactcgcttcaaggcaagcgtgattgaagcgatggaagatgattcc
attgaaacattaatccctatcgttgaatctattcagcaacaaactgaagcctctcctgaa
aaaatcatggcggctttggcgaaaattgctcagggtgacgaacccttgattttgcgtgaa
ggtgacagacctgacttaaacgccaaaccttctcatagtgatcgggagcgtgatagagct
cctcgcggtgctggcagagagcgcggtccaagagatagagatgacagacgcggtgcgcct
gcaaaaccacgtaatcgcagctctaagcctgatgaaggcatgcagcgctaccgtattgac
gtaggtcatacccacggtgctaagcctggtaacatagttggtgctattgctaacgaagct
aacatcagcagcaaaaacattggggcgattgagattttcgatactttcagtacggtagat
cttccacaaggtatgcctgccgacacctttggtgtattgcagaaaacgcgcgtagccggt
caacgtttaggtttacgtgagtggaaagacgagccacctaagcgcaaaccacgtaaaact
gacaaaagctaa
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