Aliiglaciecola sp. LCG003: QR722_18140
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Entry
QR722_18140 CDS
T09143
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QR722_18140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
alii03000
]
QR722_18140
03400 DNA repair and recombination proteins [BR:
alii03400
]
QR722_18140
Enzymes [BR:
alii01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
QR722_18140
Transcription factors [BR:
alii03000
]
Prokaryotic type
Helix-turn-helix
AraC family
QR722_18140
DNA repair and recombination proteins [BR:
alii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QR722_18140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF8814
Motif
Other DBs
NCBI-ProteinID:
WJG09225
LinkDB
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Position
complement(4160514..4161890)
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AA seq
458 aa
AA seq
DB search
MTDTQLFQQARQARDSRFDGVFFVAVKSTGIFCRPICPAPAPKEQNVEYFSLAPLAIQAG
YRPCLRCRPDSAPGSYAWKGVDTTVERAVTLLTSFPELTVIQICEKLGVSDRYLRDLFIR
KLGIAPKKFRLYDQLLFAKNLLHNSGLNIEQVAQASGFSSARRLQDNLKTSLQLTPSQIR
KSDNSDLTRIKPTNLQRLSIRLAFRQPYHWPHLRDFLAIRAIPGVEEVTQGSYAKNFSLE
GVQGHFTAIFEAQKNSFLVELQISDLRQIKAVVYHIRRVLDLDCDPDLIRQGLLQAGIKP
EDLLEGIRLPGVWSPFEAGCRAILGQQISVKAAINLVSLLVQKLGIQADSLLYFPSPQAV
AESDLNFLKMPDKRRQTLRDFARYQIDNHEQSDLSQWLRIKGVGPWTVAYAQMRGQSQPD
IWLNTDLVVKKQIVKNALNDEQAAPWRSYLTFQLWSMA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacggatacgcaattattccaacaagcccgacaagcccgcgatagcaggtttgatgga
gtgttttttgtggcggtgaaaagtaccggaatattttgtcgacctatttgcccagcccca
gcgcctaaagagcaaaatgtggaatatttttcgttggcacctctggcgattcaagccggc
tatcgaccttgcttacgttgcaggccagacagtgcgcctggctcttatgcgtggaaaggg
gttgacactaccgtagaacgagccgtcacattattaacctcttttcctgagttgactgtg
atacaaatatgcgaaaaattaggtgtcagtgacaggtatctacgagatctattcattcgc
aaactgggtatcgcaccgaagaaatttcgcctttatgatcagttgttatttgctaaaaac
ttgttgcataacagtggactcaatattgaacaagttgcgcaagcaagtggtttttccagc
gctagacgtttgcaagataaccttaaaacaagtttgcaattgaccccgtcgcaaattcgc
aaaagtgataatagtgatttgacccggataaaacctaccaacttacagcggctttctatt
cgcctagcctttaggcaaccctatcactggccacatttacgagatttcttagctattcga
gcgatacccggtgtggaagaagtcacacagggaagctacgccaaaaactttagtttagaa
ggcgtacaagggcattttaccgcgatatttgaggcgcaaaaaaacagcttcttagtagaa
ttacaaataagtgatttacgtcaaattaaggccgtggtctatcatattcggcgggtattg
gacttggattgcgatccggatttgattcgacaaggattattacaagcgggtatcaagccc
gaggatcttctcgaaggtattaggctgccaggggtttggagcccatttgaagcgggttgc
agggcaattcttggacagcagatttcagtcaaagcagctatcaacttagtctcattgtta
gtgcagaagttgggtattcaagctgatagcctgctgtacttcccctcgccacaagcggtg
gcagagtccgatttaaactttttaaaaatgccggataagcggcggcaaacattgcgtgat
tttgcccgctatcagatagataatcatgagcagtcagatttgtcccaatggttaagaatt
aaaggcgttggcccttggactgttgcttatgcacagatgcgcggtcaatctcagcccgat
atttggcttaatactgacctggttgttaaaaagcagatagttaaaaatgccctcaacgat
gagcaagctgcaccttggcgaagttatttgacatttcaactctggagtatggcatga
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