Austrofundulus limnaeus (annual killifish): 106511157
Help
Entry
106511157 CDS
T06063
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106511157 (nrde2)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106511157 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
106511157
NCBI-ProteinID:
XP_013855359
UniProt:
A0A2I4AIP9
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MALFPAFAEAAKNKVDDSAKELDWLNNKSFLTGDALSLHSRFTDKNSEKPNQREASAARD
LTSTEEEERGGSEVPPKKKKKKSEKRRKKKKKHKKKSGRYSSSNGSDSDNIYPSDLKREE
EEVRQQAPLASHFSWLDDLQSPTDQPFCVDRKPDPANWTYKSLYRGDIARYKRKGTSSLG
LNSQRQAVSWDDSETKKKQKGRDSKAADRYYSTASRQMLRSEPPIPVLSSDNSDAFRSTA
FLPLGDVDKDNKESGDRVQTLSVNPLGVYDSSTTLWLQGKGPQDNQKVELETEETPVRVV
GRTEEFNKRLREQPTDTQLWIQFINYQDEVSAVAFGGEEEQQGSDSAERRKSSYRAILEK
KLSIAERAVASNPTCIALQLEKLKICQELWEPSALAKEWKKLVFLHPNSAPLWRKYLLFT
QSYFSFFTVTKVNSAYGKCLSTLSAVRDGSMLSHPAPPGIEEDMLDIFTQQCHFLRQSGH
SEKAISLFQAMMDFTFFKPDSVKNLSTKQQVEFFEPFWDSGEARVGEVGAKGWKSWMIQQ
ERGGWVQPSEEEEEDEEEEEEEVKDGSLPRAAVWLDVESSREAAHWLPWRPDKTKGQSEE
DCEDPDRQVLFDDIGPSLICLSSPELQLRLLLHFSSFLGLPVHSAPPSALCQPDLLLENL
SLLTQGNDPQRPLTSYDLPDPGVNPVGHMTTLQGTRKWAGLGRQGEKFLTNVLNTMQPLL
PPHHRAVLSLCWIQYEKLKVLRCLRSAHKKRLRSQGKSSKRVVRRLLKEPENRSSLALWR
EYAHLEWLLGNLDEARKVFSTAAAMGGANGLSSPALCDLCLLWAQLEVEDGVKEHAGRLP
DVTTSPAVCVLARLAEGASSGSVSPVFILKARRSFEQALDQNIQRLQSDKEGSSEESLRL
RELVGCFILFQYLTVGIQAAMAVYAQARERMEELLLKPAPEGQQNRNKTVAPEASPSADL
TNRTGRLASECEALSVQQAALLRFHGSTAVFPLATLRQMLTSALSAWPNSAPMWSMYLQV
ENRHHSAGRARRFFHTVTRDGSSSVVPRLFAIVAEQQRKQLVDAAQRSCCFDKPSPLLPE
IGLSNRIRGLFESAIATETGAHCSLLWRMYIHFLVSEGKVEKARGIFYKALQSIPWAKGL
YMDAARLFPEHLQEFVDLMTEKELRLRLPLEELDILLED
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggctctctttccagcttttgccgaagcggctaaaaacaaagttgacgattcggctaaa
gagttagattggctgaataataagagttttctgaccggggatgcgctctcccttcacagt
cgttttacagacaagaacagtgagaaacccaaccagagggaagcgagtgccgcaagagat
cttacctctactgaggaggaagagagaggaggaagtgaagtgccacctaaaaagaagaaa
aagaaaagcgaaaaaaggaggaaaaagaagaaaaagcacaagaagaagagcgggaggtat
tcaagcagcaatgggtcagactctgacaacatctatcccagtgaccttaaaagggaagaa
gaggaagttaggcagcaggctccgttggcgagtcacttctcctggttggatgatctccag
tcacccacagatcagcccttctgcgtggatcgtaaacctgacccggctaactggacttac
aagtctctgtacagaggagacattgctaggtataagagaaaaggcacctcctctttgggt
ctgaactctcagcggcaggctgtcagctgggacgattcagaaacraaaaagaaacaaaag
ggaagggacagtaaagcagcagaccgatattattcaacagccagtcggcagatgctgagg
tctgagcctccaattcctgtattatcctctgataatagtgatgccttcaggtccaccgcc
ttccttccgcttggtgatgttgataaggacaacaaagagtcaggtgacagagtacagacg
ttgtcagtaaatcccctcggtgtgtatgactcgtccacgacactctggctgcagggaaaa
ggaccacaggacaatcagaaggtggagttggagacggaggaaaccccggtgcgtgtagtt
gggaggactgaggagttcaacaagcggctcagagagcagccgacagacacacagctgtgg
atacagtttataaactaccaggatgaagtgagtgccgtggcgtttggaggcgaggaggag
cagcagggcagcgattcagctgagcgccgtaagtcctcctacagggccatcctggagaaa
aagctgagcatcgctgagcgagccgtggcctccaatcccacctgcatcgctctgcagctg
gagaagctcaagatctgccaggagctctgggagccttcagctctcgctaaagaatggaag
aaactcgtgttcctccatccaaacagcgcccccttatggaggaagtatctcctctttact
cagagctacttcagcttctttactgtgacaaaagtcaactcggcgtatggaaagtgcctg
agcacgctcagtgctgtgcgagacggcagcatgttgtctcatccggcgccgccaggaata
gaagaagacatgttggatatcttcacccagcagtgtcatttcctgcggcagtcgggtcat
tctgagaaagcgatttctctgtttcaggccatgatggactttacttttttcaaacctgac
agtgtgaaaaatctgtccaccaagcagcaggttgagttcttcgagccgttctgggacagc
ggggaggcgagagttggggaggtcggcgctaaaggctggaaatcctggatgatccaacaa
gagcgaggaggttgggttcaaccaagcgaagaggaggaggaggatgaggaggaagaagag
gaggaggtgaaggacgggagcctgccccgagctgcagtgtggctggatgtggagtcgtct
cgggaagcagctcattggctgccctggagacccgacaagaccaagggccagtcggaggag
gactgtgaggaccctgacagacaggtgctgttcgacgacatcggcccatccctaatttgc
ctgtcttcaccagagctccagctccgacttcttctccatttctcatcctttctgggtctc
ccggtgcactctgcgcctccttctgccctgtgtcagcccgaccttctcctggagaacctt
tctctgctcactcagggtaacgacccccagcgtcctctgacgtcctacgatctgcctgac
cccggggttaaccctgtaggtcacatgaccacccttcagggaaccaggaagtgggcgggg
ctcgggcggcagggtgagaagtttctcaccaacgtgctcaacacgatgcagcctctcctc
cctccccaccaccgagccgttctgtcactctgctggatccagtacgagaaactcaaggtt
ttgcgctgcttgcgaagcgcccataaaaagcgacttcgctctcagggtaagagcagcaag
cgagttgttaggaggctgctcaaagaacccgagaaccgctcgtcgctggcgttgtggcgg
gagtacgcgcacctggagtggctgctggggaacctggacgaggcccgtaaggtgttctcc
acggccgctgcgatgggcggagccaacggtctgagcagccccgccctgtgcgatctctgc
ctgctgtgggcccagctggaggtggaagacggggttaaggagcatgcggggcgactccct
gacgtaaccacgtcgccggccgtctgcgttctggcccggctcgctgagggagcgtcatcc
gggtccgtctcccccgttttcatcctgaaagccaggaggtcattcgaacaggctctggac
cagaacatccagaggctccaatcagacaaagaaggaagctcagaggagagtttgaggttg
agagaactggtcggctgcttcatcctgttccagtacctcacagttggcatccaggcggct
atggctgtttacgcccaggcgagggagaggatggaggagctgctcctcaaaccggcacca
gaaggtcagcagaaccgcaacaagacggtcgcacccgaggcgagcccctccgccgacctc
acgaacaggacgggccgtttggcttcagagtgcgaggcgctgtcggtgcagcaggcggca
ctgctgaggttccacggcagcaccgcggtgttccctctggctacgctgagacagatgctc
acctccgccctctccgcctggcccaacagcgcccccatgtggagcatgtaccttcaggtg
gagaaccgacaccacagcgccggccgggctcggcggttctttcacaccgttaccagagac
ggcagcagcagcgtggtgccccgtctgtttgctattgttgccgaacaacagaggaagcag
ctggtggacgctgctcagagatcatgctgctttgataagccctcgcctctgctgccagaa
atcggcctcagtaaccgaatccgcggactgtttgagagcgccatagcaacagagacgggc
gctcactgctctttgctgtggaggatgtacatccacttcctggtgtctgaaggtaaagtg
gagaaagccagagggatcttctacaaggccttgcagagcatcccctgggccaagggtttg
tacatggatgcggcacggctgttccccgagcatctgcaggagtttgtagatctgatgacg
gagaaggagcttcgactgaggctgcctttggaggagctggatatactactggaagactga
DBGET
integrated database retrieval system
