Austrofundulus limnaeus (annual killifish): 106514648
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Entry
106514648 CDS
T06063
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106514648 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alim03400
]
106514648 (lig3)
Enzymes [BR:
alim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106514648 (lig3)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
106514648 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
106514648
NCBI-ProteinID:
XP_013859490
UniProt:
A0A2I4AVH3
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MQRHLVLFVHKTVCVGRQQCGLLVGRQQLSKLCRAFHVSLYTEQLPSLPYSLQLSWQTSP
FTSVFHKQGLHQRVLPWFFLQRHLSNQPDMSEQRFIVEYAKRGTAGCKKCKDKIQKGIVR
IGKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQDEDKDLII
KHVSDLMAKVNASPKKKVQAKLNTTGQLMPPPADPTVNAPRKFSGFTAAKAGSSSSPGPS
SSPSSSPPXKGSPLSEQLCDPQHKDCLFREFRKLCATVAENNSYNTKTQIIEKFLKKGTG
GDKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSETVR
MFFDDSKAFPPAAKSLLTIQEVDSSLTRLAQLTKEDEQQTELEAIAKKCTSNDLKCIIRL
IKHDLKMNAGAKHVLDAVDPNAYDAFKASRNLSDVVERVLRNQQEASGGSGPRKLLTVEA
SLMTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNTFSYFSRSLKPVLP
HKVAHFKEYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVF
DCIYFNGVSLMERPLSERRKFLDDNMVEVPNRILFSEMKYVKRAADLADMITRVIREGLE
GLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGC
YDPDAKKWCTVTKCSGGYDDAMLARLQKELDVIKISKEPSKIPSWLKIIKNYYPDFIIRD
PEQAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELFRISKEH
CDFKVTAGPSGSNDDKGSSGGDSGGSSPSPKRKPPAKKTSNTTPARPKAAKSESRTPSSE
APSAKKVKKSEPSAHSNGENKPKATSQLMEPRNDKTLLDIFSGVKLFLPVSAQDFHRLRR
YFVAYDGDLVPDYDAASATHTLAEPAEDSRAQKVSSSWIWECIRKRRVVPPC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagacatctagttttatttgttcataagactgtttgtgtgggtcgacaacagtgt
ggtttacttgttggacgtcagcagctctccaaactgtgcagagccttccacgtctctttg
tacaccgaacagcttccctcccttccttattcattacaactttcatggcaaactagtcca
tttacctcagtattccacaaacaaggccttcatcaaagggttcttccctggtttttcctg
cagcgtcatttatctaaccagcccgatatgtcggagcagaggttcattgtggagtatgcc
aaacgcggcacggcgggatgtaagaaatgcaaggacaaaatccagaagggcatcgtrcgc
atagggaagatcgtgccgaaccctttcagcgagtctgcgggggagatgaaggagtggtat
cacgtgaagtgcatatttgagaagctggaaagggcaagagccactacaaagaagatcgaa
gacctcacagaactggagggctgggaggagctgcaggatgaagacaaagatctcattatt
aaacatgtttcagayctgatggccaaagtcaatgcgagtccaaaaaaaaaggttcaggcc
aaactgaacacsacgggtcagctgatgcctcctcccgctgacccaactgtcaacgctcca
cgcaagttctcaggcttcacagctgcgaaggccggcagctccagcagccccggaccatcc
tcatccccgtcctcctcgccccccgytaaaggcagccccctctccgagcagctctgtgac
ccccagcacaaggactgcctcttcagggagtttcgtaagctctgcgccacggtggctgaa
aacaacagctacaacaccaagactcagatcatagagaagttcctgaagaaaggcacagga
ggagacaagttccatggagatctttacctgaccgtgaagctgctgctgccgggtgtcgta
aaaagcgtttacaacctcaacgacaaacagattgtaaaactcttcagccgcattttccgg
tgcaaccaggacgacatggtgcgagacctggagcagggcgacgtgtccgagacagtgagg
atgttctttgacgacagtaaagcttttcctcctgctgccaagagcctccttacaatccag
gaagtagactcgtccctgacccgcctcgctcagctgacgaaggaggatgagcagcagact
gagctggaggcgattgccaaaaaatgcaccagcaatgacctgaaatgcatcatcaggctc
attaagcacgacttgaagatgaacgctggggcaaaacatgttttggatgccgtggatcca
aacgcatacgatgcgttcaaggcctcccgtaacctgagcgacgtggtcgagcgggttctg
aggaaccagcaggaggcatcyggcggttcaggacccaggaaactcctgactgtggaggcc
tcgctcatgacccccgtccagcccatgctggccgaggcgtgcaaatccatcgaatacgcc
atgaagaaatgccccaacgggatgtactccgagatcaaatacgacggcgagcgcgtgcag
gtccacaagaacggaaacacgttcagctacttcagccgcagcctcaaaccggtcctgcct
cacaaagtggctcatttcaaagagtacatccctcaggcgtttcctggtggccacagcatg
attctagatgctgaagtgcttctaatcgacacaaagaccagcaaaccgctgccgtttggg
accctgggcgtgcacaagaaagcagcctttcaagacgccaacgtttgccttttcgtgttt
gactgcatctacttcaacggtgtgagtctgatggaaagacctctgagtgaacgcagaaag
ttcctggatgacaacatggttgaagttcccaacaggatcctgttctccgaaatgaaatac
gtcaagagggcagcagatctggctgacatgataactcgtgtcatcagagaaggacttgaa
ggcctggtgctgaaagacataaagggcaactatgagccggggaaacgccactggctgaaa
gttaagaaggattatttaaacgaaggagcgatggccgacacagcggacctggtggtgctg
ggagcgttttacgggaaaggctcaaacgggggcatcatgtccagtttcctcatgggctgc
tacgaccccgacgccaagaagtggtgcacagtcaccaagtgctccggaggctacgatgac
gccatgctggcccggctccagaaggagctggacgtgatcaaaatcagcaaggaacccagc
aaaatccccagctggttgaaaatcatcaagaactattatcctgactttattatccgagat
ccagagcaagcgccggtctgggagatcaccggcgccgagttctccaaatccgagatgcac
accgccgacggcatctccatccgtttcccccgcatgacgcgaatccgcgacgacaaggac
tggaagaccgccaccaacctgcaccagctcaaggagctgttcagaatatccaaggagcac
tgcgactttaaagtgaccgccggtccgtcggggtccaacgatgacaaagggtcatccggc
ggcgacagcgggggaagctcgccgtcgcccaaaaggaagcctccagctaagaaaacaagt
aacaccacgccggccagaccaaaggcggcgaaatcagagtctcgcactcccagctccgag
gcgcccagcgccaagaaggtgaagaagagcgaacccagtgctcacagcaacggagaaaac
aaaccaaaggcaacgtctcaactgatggaaccgaggaatgacaagacgctgctggacatc
ttcagcggggtgaagctcttcctgcccgtctcggcgcaggacttccaccggctgaggcgg
tacttcgtggcttacgacggagacctggtgccggactacgacgccgcctcagccacgcac
accctggccgaacccgcggaggacagcagggcccagaaggtctcgtccagctggatctgg
gagtgcattcgaaagagacgcgtggtgcctccctgttga
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