Austrofundulus limnaeus (annual killifish): 106514872
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Entry
106514872 CDS
T06063
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106514872 (col25a1)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106514872 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106514872
NCBI-ProteinID:
XP_013859849
UniProt:
A0A2I4AWI0
LinkDB
All DBs
Position
Unknown
AA seq
538 aa
AA seq
DB search
MFLYVSGPPGKRGRRGRDGEPGPPGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLI
KRRLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGLPGLPGDPGQSGEAGPMGPE
GPQGPMGSLGPPGVDGLKGDVGIPGLDGIPGVKGEKGDMGEKGDMGEDGPKGDMGEKGDA
GSSAAGIKXEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERG
DHGPPGKGERGDIGPVGPKGSQGEAGVPGSKGSKGETGDKGDLGSVGPKGPPGQKGDRGA
TEIIDYNGNIEEALQGPPGPPGPMGPQGIKGDRGLPGLPGLDGERGYKGSKGDMGMPGAS
GEKGTTGLPGLPGVNGAKGDKGDAGMPGPQGPSIVGPPGPPGPHGPPGPMGPHGFPGAKG
EPGLHGLKGMRGEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPPGPAGPAGPKGDIGEKG
GPGEPGPRGPYGLPGAAGAAGTPGLDGLPGLKGDKGNDGERGEKGFRGFKGEKGEPGQ
NT seq
1616 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttatgtttcaggacctcccgggaagcgaggaagaagaggccgtgatggagaa
cctggacctcctggccctccaggtccaaagggggataagggggatcaaggtgaccaggga
cctcggatggtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcata
aagcggcggctcattaagggagatcagggccaagcgggaccrcccgggcctccagggcca
cctggtcctcctggaccgagaggccctccgggggacacgggaaaagatggacccagaggt
ctgccaggtctacctggtgatccaggacagtcaggagaagcaggacctatggggcctgag
gggccacaggggccaatgggatcactcggacctcctggtgtcgacgggctgaagggggat
gttggcatcccgggactggacggtattccaggggtcaagggtgaaaagggagacatgggt
gaaaagggcgatatgggtgaggacggaccgaaaggtgacatgggggagaagggagatgct
ggctcctctgcggcaggcatcaaggntgaacctggagaacctggtcgaagcggactgaag
ggagaaccaggactaccagggctgcctggactcccaggaataaagggcgagcctggattt
ttgggcccccagggagaaccggggcttccaggactgccaggcaccaagggggagagaggt
gaccacggaccacctgggaagggcgagcgaggagacatcggacctgttgggccaaagggt
tcacaaggagaggctggtgtgcccggttccaaagggtcaaagggggagactggagataaa
ggagacttgggatctgttggtccaaagggtcctcctggacagaaaggagaccgaggggcg
actgaaatcatcgactacaatggaaacatcgaagaggccttgcagggtcctcctggtcca
cctggaccaatgggaccacagggaataaagggggatcgtggtttgcccggtcttcctgga
cttgatggtgaaagaggctataaaggttcgaagggagacatggggatgcctggggcctcc
ggagagaaaggaaccactggattacctggtttacctggtgtcaatggggcaaaaggagat
aaaggagatgcaggaatgcctggtccacaaggtccatctattgtyggacctcctgggcca
ccaggacctcatgggcccccaggacctatgggacctcatggatttcctggtgcaaaggga
gaaccaggtctgcatggtctgaagggaatgagaggagaaccaggacacaaaggagatcgt
ggaccgttgggcctccctggagcctccggcttggacggcaagcccggaattaggggcatg
gacgggccgccgggtccagctggtccagctggaccaaagggtgacataggggaaaaagga
ggaccgggtgaaccaggaccgcgaggtccttatggattaccgggtgcagctggagcagct
ggaacaccaggactggacgggttgccaggcttaaagggagataaaggcaacgatggggaa
agaggagaaaagggtttccggggatttaagggtgaaaagggggaaccagggcagat
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