Austrofundulus limnaeus (annual killifish): 106515481
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Entry
106515481 CDS
T06063
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106515481 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106515481 (prpf8)
Spliceosome [BR:
alim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106515481 (prpf8)
Complex C
U5 SnRNP specific factors
106515481 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
106515481
NCBI-ProteinID:
XP_013860763
UniProt:
A0A2I4AZ65
LinkDB
All DBs
Position
Unknown
AA seq
2355 aa
AA seq
DB search
MAAPFPYRGVLPGMPPGVPPVVVPSVVPPGVSPIVPPPAPVPDYMSEEKLQEKARKWQQL
QAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVL
KLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDSEEDSSVVEWFYEHQPLKDSTKFV
NGTTYRRWQFTLPMMSTLYRLANQLMTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFE
PLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFI
KTEDPDLPAFYFDPLINPISHRHAVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTAN
GIALLWAPRPFNLRSGRTRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALK
HRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDY
NFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQY
IFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFF
MRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEG
IKQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRER
IRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESR
RFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSR
IKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWI
KPADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRFEKMYEKIDLTLLNRLLRLI
VDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASE
MAGPPQMPNDFLSFQDTTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDP
NNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSK
DNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRF
HNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIK
IGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHE
EDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAITQNRRLTLEDLEDSWDRGIPRIN
TLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGG
VEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSP
TINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQE
LDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKY
WIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFP
GGKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFV
DDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWK
TAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVE
KFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTT
VTEPHHIWPTLTDEEWIKVEVALKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPS
QQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISA
ANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVK
EIRCIVMVPQWGTHQTVHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIM
ADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQ
MLLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASL
QEGEIYNADREDMYA
NT seq
7068 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccctttccctatagaggggtgcttccagggatgccaccaggagtgcctccg
gttgtggttccctcggttgtccccccaggtgtttcacctatagtaccccctcctgcacca
gtcccagattacatgtctgaggagaaactgcaagaaaaagcaagaaaatggcagcagttg
caggccaagcgctatgcagaaaaaagaaagtttggctttgtggatgcccagaaggaggac
atgcctcctgaacatgtccgcaaaatcattagggaccatggagatatgaccaacagaaag
tttcgccatgacaaaagggtctaccttggtgctctmaagtacatgccccatgccgtgctg
aagctgctggaaaacatgccgatgccctgggaacaaatccgagatgttcctgtgctctat
cacatcactggagccatttcctttgtgaatgaaatcccttgggtcatagagccggtctac
attgctcagtggggctctatgtggatcatgatgcgtcgtgagaagcgtgatcgacggcac
ttcaagagaatgcgttttcctccgtttgatgaygaggagccgccgctggattatgctgac
aacatccttgacgtggagcctctggaggctatccagatggagctcgattctgaggaagac
tcctccgttgtggagtggttctatgagcaccagcccctcaaagactcgaccaagtttgtg
aatggcaccacatatcgccgctggcagttcacactgcccatgatgtccactctgtatcgc
ttggccaatcagctcatgacagacctggtggattttaattacttttatctgttcgacctc
aaggcctttttcacatccaaggcattgaacatggccattccaggaggaccaaagtttgag
ccgctggtcagagacattaaccttcaggatgaagactggaacgagttcaacgacatmaac
aaaatcattatccgacagcccatcaggacagaatacaaaatcgctttcccttacttgtac
aacaacttgccacatcacgtgcacctcacctggtaccacacaccaaacgtggtatttatc
aaaacagaggatccagatcttcctgcgttctactttgaccctctgatcaaccccatttct
cacagacatgctgtcaagagtcaggagccccttcctgacgatgatgaggagtttgagctt
cctgagtacgtggagcccttcctcaaagagacrccgctctacactgacaacacggctaat
ggcattgctctgctctgggctccaagacccttcaatctccgctctggtcgcacaaggcgt
gccatygacatccccttggtcaagaactggtatcgagagcattgtcctgcaggacagccg
gtgaaagtgcgtgtttcgtaccagaaactgctgaagtactacgtcctcaatgcactcaaa
cacagaccacccaaggctcagaaaaagaggtatcttttccgctccttcaaagccacaaag
ttctttcagtccaccaagctggactgggtggaggtgggcctkcaggtgtgcaggcagggc
tacaacatgctcaatctgctcatccaccgaaagaacctcaactayctgcatctggactac
aacttcaacctgaagcccgtgaagacactgactacaaaggagcgaaagaagtccaggttt
ggtaatgccttccatctgtgcagagaggtgctgcgtctcagtaagctggtggtggacagc
cacgttcagtacagactgggaaatgttgacgctttccagttggccgacgggctgcagtac
atcttcgcccatgtgggtcagctgaccggcatgtaccgctacaagtacaagctgatgagg
cagatccggatgtgcaaagacctgaaacatctcatctactaccggttcaacactggtcct
gtgggcaaaggtccaggttgtggcttctgggctcctggttggagagtgtggctcttcttc
atgaggggcattactccactgttggagaggtggctcgggaatctgctggccaggcagttt
gaaggacgtcactcgaagggtgtggcyaagaccgtgaccaagcagcgtgtggagtctcac
tttgacctggagttgcgtgctgcagtgatgcacgacatcctggatatgatgcctgagggg
atcaagcagaacaaagccagaaccatcctgcagcatctcagcgagtcctggaggtgctgg
aaagcaaacatcccatggaaggtccctgggctccccactcccattgagaacatgatcctg
cggtacgtgaaggccaaggctgactggtggacaaacacggctcactacaaccgtgagcga
attcgtcgaggcgccaccgtggacaagacrgtgtgcaagaagaacctgggcaggctgacc
cgtctgtacctgaaagctgagcaggagcgacagcacaactacctgaaggatggtccctac
atcacagcagaagaggctgtggctatttacaccaccactgtccactggctggagagtcgg
cgcttctctcccatccctttccccccattgtcctacaaacatgacaccaagctgctgatc
ctggccctggagaggctgaaagaggcatacagtgtgaagtctcgtctgaaccagagtcag
agggaggagctgggtctgattgagcaggcctacgacaacccccacgaagctctttccagg
atcaaacgtcatctgctcacacagagagcgttcaaggaggttggtatcgagttcatggac
ttgtacagccaccttgttccygtttacgatgtggaacctttggagaagatcacagatgcc
tacctggaccaatacctgtggtacgaggcagacaagagacgccttttcccaccatggatc
aaacctgccgacaccgaacctcctcctctgctggtctacaagtggtgtcaaggcatcaac
aacttgcaggacgtgtgggaaactgcagagggagaatgcaaygtgatgctggagtctcgc
tttgagaagatgtacgagaagatcgatctgacgttgctcaacaggttgctgcgtcttatt
gttgatcacaacattgctgactacatgacggccaagaacaacgtagtcataaattacaag
gacatgaaccacaccaactcttacggcatcatcagggggctccagtttgcttccttcatt
gttcagtattacggcctcgtcatggacctgctggtgctcggattacaccgggccagcgag
atggctggcccgccccagatgccgaacgacttcctcagtttccaggacaccaccacagag
agcgcycatccgatcaggctgtactgccgttacatcgaccgcattcacatcttcttcagg
ttctctgccgatgaggccagagacctgattcagcggtacctgaccgagcacccggacccc
aacaacgagaacatagtgggctacaacaacaagaagtgctggcctcgagatgctcggatg
agactaatgaaacacgatgtcaaccttgggcgagcagtgttctgggacatcaagaaccgc
ctgcccaggtctgtgaccactgtgcagtgggagaacagctttgtstcggtgtacagcaaa
gacaaccccaacctgctcttcaacatgtgtggctttgagtgccgcatcctccccaagtgt
cgcaccagctacgaggagttcactcacaaggacggagtctggaacctgcagaacgaggta
accaaggagaggacagctcagtgtttcctgcgtgtggatgatgaatcaatgcagcgtttc
cacaacagagtgcgtcagatcctgatggcctctggatctacaactttcaccaagattgta
aacaagtggaacacggctctgatcggtctgatgacgtacttccgtgaggctgtcgtcaac
acrcaggagctcctggatcttctggtgaaatgcgagaacaagatccagactcgtatcaag
attggcctcaactccaaaatgcctagccgcttccctccggtggtcttctacactccaaaa
gagttgggaggtctgggcatgttgtccatgggtcacgtgctcatcccacagtcagacttg
cggtggtccaagcagacggacgtaggaatcactcacttcaggtctggaatgagccaygaa
gaagaccagctcattcccaacttgtatcgttacatccagccgtgggagagcgagttcatt
gaytctcagagggtgtgggctgagtatgccctcaagagacaggaggccattacccagaac
aggcgtctcactctggaggatttagaggactcgtgggacagaggaatacctcggatcaac
acacttttccagaaggacaggcacactctggcttatgacaaaggctggagggtcaggaca
gatttcaaacagtatcaggtgctgaagcagaatccgttctggtggactcaccagaggcac
gacggtaaactgtggaacctgaacaactaccgcacagacatgatccaggcgctgggcggc
gtggagggcatcytggagcacacgctcttcaaagggacttacttccccacctgggagggt
cttttctgggaaaaggccagtggttttgaggagtccatgaaatggaagaagctgacgaac
gctcagagatctggtctcaaccaaatcccaaaccgtcgcttcactctctggtggtcaccc
accatcaacagagccaatgtgtacgtaggtttccaggtgcagctcgacttgacgggcatc
ttcatgcacggcaagattcccacgctgaagatctccctcattcagatcttcagggctcac
ctgtggcagaagattcatgagagcatcgtcatggatctctgccaggtgtttgaccaggag
ctggacgctttggagattgagacggtgcagaaggagaccatccaccccaggaagtcgtat
aagatgaactcatcctgcgcagacatcctcctcttcgcgtcgtacaagtggaacgtctcc
cgaccatctctgcttgctgactcaaaggacgtgatggacagcaccaccacacagaaatac
tggatcgacattcagctccgatggggagactacgactctcaygacatcgagcgctacgcc
agagccaagttcctggactacaccacagacaacatgagtatctacccctcccccaccgga
gtgctcatcgctatagacctggcttacaatcttcacagtgcctatggtaactggttccct
ggaggaaagcctctgatccaacaggcyatggccaagatcatgaaggccaaccccgccctt
tatgtgcttagagagcgcatccgtaaaggtctgcagctgtactcgtcagagcccactgag
ccctacctgtcctcacagaactacggtgaactcttctccaaccagatcatctggtttgtg
gatgacaccaatgtgtacagagtcaccatccacaagacttttgaaggaaacttgaccacg
aagcccatcaatggagccattttcatcttcaaccccaggactggtcagctcttcctcaag
atcattcacacgtctgtgtgggctggacagaaacgtctgggacagctggccaaatggaaa
acagctgaagaagttgctgccctgattcgttccctcccggttgaggagcagccgaaacag
atcattgtaaccagaaagggaatgctggaccctctggaggtccatttgctcgacttccct
aacatcgtgatcaaaggctctgagttgcagctgcctttccaggcctgtctgaaggtggaa
aagtttggagacctgatcctgaaggcgacagaaccacagatggttctgttcaacctctac
gatgattggttgaagaccatttcatcttacacagccttctcgcgtctcatcctgatcctc
agagctctccatgtcaacaacgaccgagcaaaggtgatcctgaaacctgataaaaccacc
gtgactgagccccatcacatttggcccacgctcaccgatgaggagtggatcaaggtggaa
gtggcgctcaaagatctcatcctggctgattatggcaaaaagaacaacgtgaacgtggcc
tctctgacccagtcggagatccgtgacatcatcctgggtatggagatctcggccccgtca
cagcagcggcagcagatcgcagagatcgaaaagcagaccaaagaacagtcccagctcacc
gccacgcagacccgcaccgtcaacaagcacggagacgaaatcatcacttccaccacctcc
aactacgagacgcagaccttctcctccaagaccgagtggcgagtccgagccatatctgct
gccaacctccatctccgaaccaaccacatctacgtatcatccgacgacatcaaggagaca
ggatacacctacattctgcccaaaaatgtcctcaagaagttcatctgcatctcagatctg
agggctcagattgcaggctacctgtatggcaccagcccaccagacaaccctcaggtgaaa
gagatccgctgcatcgtcatggttcctcagtgggggacacatcagaccgtccacctcccc
aaccagctgcctggtcacgaatatctcaaagaaatggagcccctcggctggatccacaca
cagcccaacgagtcgccgcagctgtccccacaggacgttacaactcatgcgaagatcatg
gctgataacccatcctgggatggagagaagaccatcataatcacttgcagcttcacacct
ggctcgtgcacactcacagcctacaagctgacacccagtgggtacgaatgggggcgtcaa
aacacagacaagggcaacaaccctaaaggttacctcccctcccactatgaacgagttcag
atgctgctctctgatcgtttcctgggcttcttcatggtgcctggccaagtctcctggaac
tacaacttcatgggtgtgcgccatgatcctaacatgaagtacgaccttcagctggccaac
cccaaggagttctaccatgaggtccatcggccctcgcacttcctaaactttgcctctctg
caggagggagagatttacaacgctgaccgcgaggacatgtacgcctaa
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integrated database retrieval system
