Austrofundulus limnaeus (annual killifish): 106516230
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Entry
106516230 CDS
T06063
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106516230 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106516230 (nup54)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106516230 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
106516230
NCBI-ProteinID:
XP_013861941
UniProt:
A0A2I4B2I4
LinkDB
All DBs
Position
Unknown
AA seq
580 aa
AA seq
DB search
MAFSFGGATSNTAPSTSGFSFGSFGAKTTAPTTFGFNPTATTTTASSGFGTLTAPSFGAA
TTTSAPATGFSFGSTNTGFGGLGAGNTTAGTFGGFGTTTTSAAAPGSTFSFAAPSNTAGG
LFSNTQNKGFGFSSGLGTGTATGASGFGTGLGTTGLGGFGGFNIQSTQQQQGGLFGQPAQ
QQGQTQPTQLYQQVTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNSQPVDFTQE
NPFCRFKAVGYSCIPVSKDEDGLVVLMLNKKEADVRAQQQQLVESLHKVLGSNQTLTVNV
EGVKSLPNDQTEVIIYVVERSPNGTSKRIPASNLFSYLEQANIKVQLTQIGVIMSVTRTE
LSPAQLKQLLQNAPAGVDPIIWEQAKVDNPEPERLIPVPMVGFKELLRRLQIQEQMTKQH
QTRVDIISNDISELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDE
EHLRVQLDTIQSELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYSVDADLLREIKQHL
KQQQDGLSHLIGVIKEDMEDIKLIEHGLSDSGHMRGGILN
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggcgccacgagtaacacagcgccaagcacgtccgggttttca
tttggctcatttggtgccaagacaacagctccaacaacgtttggtttcaacccgacagct
acaaccaccaccgcctcctcagggttcggcactttaacagctcctagttttggggcagcg
accaccacctctgcaccagccactgggtttagttttggctccaccaacactggatttggg
gggcttggagctggaaacaccacggctggaacatttggtggttttgggacgaccacaaca
agcgctgcagcaccagggtccactttcagctttgctgccccctctaatactgcaggaggc
ctgtttagtaacacacaaaacaaagggtttggattttcatcaggccttggaactggtacc
gccactggagcatcaggttttggaactggattaggaacaactggccttggtggatttgga
ggttttaacatccagtcgacccaacagcagcaaggaggcttgtttggccagccggcccag
cagcagggtcagactcagcccacccagctttaccagcaggtcaccgctctgtcggccccg
accctgttaggagatgaacgggactccattcttgctaagtggaaccagctgcaggcctac
tggggtacaggaaagggctactacagcaacaacagccagccggtggattttactcaagag
aaccctttttgcaggttcaaggctgtgggatatagctgcatcccagtgagtaaggatgaa
gatggtttagtggtcttgatgctcaataagaaagaagcagacgtgagggcgcagcagcag
cagctggtggagtctcttcacaaagtcctgggaagcaaccagacactaactgtgaatgtg
gaaggggtcaaatccctgccaaatgaccagacagaggtgatcatttacgtggtggagcgt
tcccctaacggcacctccaagaggatcccagcctccaatctcttcagctacctggagcag
gccaacattaaggttcagctcacacagatcggagtgatcatgtcagtcacacgcacagag
ctctcaccagctcagctcaaacagctgctgcagaacgctcctgcaggagtggatcccatc
atctgggaacaggctaaggtggacaaccctgaacctgagaggttgatccctgtccccatg
gttggttttaaggagctgctgcgcagattacagatccaggaacagatgactaaacaacat
cagactagagtggatatcatctccaacgacatcagcgagctgcagaagaaccaggcgaca
accgtggccaagattgctcaatacaagaggaagctgatggatctctcacacagagtgctg
caggtactgatcaaacaggagattcagagaaaaagcggttatgctatccaggtggatgag
gagcacctcagggtgcagctggacaccattcagtcagaactcaatgctcccacacagttc
aagggccgtttgaatgaattaatgtcccagattcgaatgcagaaccactttggagctgtg
aggtcagaggagcgctacagtgttgatgcagaccttctcagagaaatcaaacaacatttg
aagcagcagcaggacggcttaagtcacttgattggcgtcatcaaagaagacatggaggac
atcaaactgattgagcacggactgagtgacagcggtcacatgagaggaggcatcttgaac
tga
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