Austrofundulus limnaeus (annual killifish): 106516239
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Entry
106516239 CDS
T06063
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106516239 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106516239 (skiv2l2)
03041 Spliceosome [BR:
alim03041
]
106516239 (skiv2l2)
03009 Ribosome biogenesis [BR:
alim03009
]
106516239 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
alim03016
]
106516239 (skiv2l2)
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106516239 (skiv2l2)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106516239 (skiv2l2)
Spliceosome [BR:
alim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106516239 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
106516239 (skiv2l2)
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
Pre-60S particles
Helicases
106516239 (skiv2l2)
Transfer RNA biogenesis [BR:
alim03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106516239 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
106516239
NCBI-ProteinID:
XP_013861952
UniProt:
A0A2I4B2K4
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MADPFGDGLFSVFDEEQQSSGSKKIPASISTDTGKAAGIDDDKDAGPSRIKREADCDGGE
DTVFTKRPRQETANDLNLAEFMPQVKVEQVETVEGCSHEVALPAEDEYKPLKPRVGKAAK
EYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKAL
SNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEI
HYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYRPT
PLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDSGESGASSGGSKWERGRKGSTR
GPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNSDDEKRLVEEVFSNAVD
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIKKLE
EQYHTIDIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNEDADF
GWGVVVNFCKKTNVKTSTDSEPLYVVEVLLHCSKESVKDAATEAARPAAAGETGEMQVVP
VMLHLLASISSVRLYTPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGL
KKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQMDE
LKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTAEQATALLS
CFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEDSYLTQFKPHLMDVI
YAWANGSTFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGITKI
KRDIVFAASLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccccttcggagacggattgttcagcgtgtttgacgaagaacaacaaagttct
ggcagcaaaaagattcccgcaagcatctccacagacacaggaaaagctgccggtatcgat
gatgacaaagatgcaggtccatctcggatcaagagggaggctgactgtgacggaggagag
gacacggtgtttacgaagaggcctcgacaggagacggctaatgatctaaatcttgcagaa
tttatgcctcaggtgaaggtggagcaagttgaaactgttgaaggatgctcacatgaggtt
gctctacctgcagaagacgagtacaaaccactaaaaccaagagttgggaaagccgctaag
gaatacccttttgtactggatccctttcagcgtgaggccattttgtgtatcgacaacaac
cagtctgtgcttgtgtctgcacacacctctgcaggcaaaactgtgtgtgctgaatatgcc
atagcactggctctcagggagaagcagagagttatcttcaccagcccaatcaaggccctg
tccaaccagaagtacagagagatgtacgaagagtttcaggatgtgggactgatgaccgga
gacgtcaccatcaacccgactgcctcatgcctcgtcatgaccacagagattttgaggagc
atgttgtatcgaggctcagagatcatgcgagaagtggcgtgggtcgtttttgatgagatc
cattatatgagagacgcagagcgtggtgtggtttgggaggagaccatcattcttcttcct
gacaatgtgcactacgtttttctctctgctaccattcccaatgccagacagtttgctgag
tggatctgccatttacataagcagccttgccatgtggtttatacggagtaccgtcctact
ccactgcagcattacatctttccagcagggggagatggactccatctggtggttgatgag
aatggggactttagagaagacaatttcaacacagccatgcaggtgctgagagattctggg
gaatccggagccagcagtggaggcagcaagtgggaacgaggacggaaaggaagcaccaga
ggtccatccagtgttttcaagatagtgaagatgattatggagagaaacttccagccagtc
atcatattcagcttcagtaagaaggaatgtgaggcctacgctctgcaggtggccaaactg
gacttcaacagtgatgatgagaagcgtctggtggaagaagtgttcagcaatgcggtggat
tgtctttctgatgaggacaagaagctgcctcaggtggagcatgtgctgccactgttgaag
agagggataggaatccatcatggaggcctcctgcccatcctgaaggaaaccatagagatt
cttttctctgaaggcttgattaaggccttgtttgccacggagacatttgccatgggtatt
aacatgccggctcggactgtgctcttcaccagcgcacgcaagtttgatggcaagaatcac
cgctttattacatcaggtgaatacatccagatgtctggccgtgctgggaggagaggaatg
gacgataggggaattgttattttcatggtggatgagaagatgagtccagccgtggggaaa
cagctactgaagggctcagcagaccctttaaacagtgccttccacctgacctacaacatg
gtgctcaacctgctgcgtgtggaagagatcaacccagaatacatgcttgagaagtccttt
taccagttccaacactacagagctctgcctggtgtggtggaaaaaataaagaagttagag
gagcagtaccacactattgacatcccgaatgaagagagtgtggtcacttactttaagatc
aggcagcagctggccaaactgggtaaagaaatacaagaattcatccacaaacccaagtac
tgcctgccgttcttgcagcctggacgacttgtgaaggtaaaaaatgaggatgctgacttt
ggctggggagttgttgtgaacttttgcaagaagaccaacgtaaaaaccagcacagactct
gagcctctgtatgtggtggaggttttgcttcattgtagtaaggaaagtgtaaaagatgct
gcaacggaagctgccagacctgcagctgctggggagactggagaaatgcaggtggttcca
gtgatgctccatctcctggcttcaatcagctcggttcgcctttacacccctaaagacctg
agaccttttgacaacagacagctcatgctcaaatccatccaggaggtgcagaaacgtttc
ccagacggcgttcctttactcgaccccatcgatgacatgggcatcaaagacccagggctg
aagaaagtgattcagaaggtggaggccttcgagcaccggatgtacacccaccccctccac
agtgaccccaatttggaatctgtctattcactgtgtgagaagaaagctctgattgcggca
gatgttcgaacggccaaacgagagctgaagaaggctcgaaccgtcctgcagatggatgag
ctgaagtgccggaagagggttctccgaagactcggctttgccagtccttctgatgtcatc
gagatgaaagggcgtgtcgcctgtgaaatcagcagcggtgatgagctcctgctgacagag
atggtgtttaacggcctcttcaacgacctgacggctgaacaagccaccgccctcctgtcc
tgcttcgtcttccaggagaacgccaacgagatgccaaagctgactgaacagctggctgca
cctctcaggcagatgcaggagtgtgcgaagcgcattgccaaagtgtctgcagacgccaag
ctggaggtggacgaggattcttacctgacccagttcaagccccacctgatggatgtgatc
tacgcctgggccaacgggtccacgtttgcgcaaatctgcaagatgactgacgtctttgag
ggaagcatcatccgctgcatgcgccgcctcgaggaagtgctgcgacagatgtgctctgca
gccaaagccatcggcaacactgaactggagaacaagtttgcagaaggaataacgaagatc
aagagagacatagtctttgctgccagtctgtatttatag
DBGET
integrated database retrieval system
