Austrofundulus limnaeus (annual killifish): 106516523
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Entry
106516523 CDS
T06063
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
alim01001
]
106516523 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
alim04054
]
106516523 (ciita)
Enzymes [BR:
alim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
106516523 (ciita)
Protein kinases [BR:
alim01001
]
Serine/threonine kinases: Other
TAF1 family
106516523 (ciita)
Pattern recognition receptors [BR:
alim04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
106516523 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
NPHP3_N
LRR_8
AAA_22
AAA_16
NB-ARC
nSTAND3
DUF815
nSTAND_NTPase5
AAA
TsaE
SRP54
nSTAND6
AAA_19
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
106516523
NCBI-ProteinID:
XP_013862380
UniProt:
A0A2I4B3Q9
LinkDB
All DBs
Position
Unknown
AA seq
1514 aa
AA seq
DB search
MAQFSEVLEQVRSVLAWASPAEVQVLLDGLVEDRITSEANDFHFSLRLSDRKAEPQSSTE
PIQKPISDSESVHRGNFGNQEEWLEHVEEAAAVNIPLWKDYEQGQQMLQAMIPLETMFSS
MRDDVVSDREAFHPDWDVEEETDLATACRMLDASTDDSELSETISSDRAEQKGNNFSTVD
LAELNTSLFRVAGAAGNVSPVEACSGTGTNSSTCIQESRSDVFWQDNKTADVLDNLSSLT
DAFSRSFSAIPKTTFRHLLSSGASQDTKTDEYFHSNTCCLAEGIREDEFRSTSCDNGIRD
ILDSMDLLRDAKMQEFDQDFLIPDLLPEDLSELLNDECFDEICKYGCFEDFLSDCETPTL
LKVPDLPIPASPIPHREPQTIKQPKNKRKRPRVSHLTKKNPTAKRAKVTDQPVTPETNDE
PPITPGADAVSVLTPEPERELPTTPPLLQVYPSPPAAPIPIQFITLPENSGYQVVQLSSP
PPPIIGLPLPNMTATPTYIIVPATPPPCKRQVPPLSPVNGTIAPVLMSSFPPGSLSDMTS
KDVSPPPSPETEVSPCKESPKSPAVVKIPQGVKDYIQQYKAHMAETCQVMEEYLSLNDHY
IDVQVSRREIIRSGKNTNRSLDKDLIVIGDXDRQKSSVEQSRIFQSLNGDKCNKRYILLF
GNAGMGKTTLIKKLCFDWSKDCIPQFDFVFLLDGKKLTLGEPAYSLQTLLLNLSSYASPY
TDSGEVYAQILAAQKRVLIIFDGFDELRDYETLLQTLEKDLVTSLQRDGKVQGFTVKQLF
SGILQRVLLPGCTLLLATRPRGTATQLLRRTDSLLEVCGFSPTNVETYLSKYFTDPMLRE
SAVDCLKASSYLKLLCWNPGLCHLVCMVLEQSKPSEILPRTLTGLCHDVLCLKLEKDRGS
TQLPNETQEQSAQEAPTENSNNSQAGKGCKTNPKKSRGVRQSARCSQKARNAKGEGGHQE
KVDEANVLEDADRKEDKELLFQLSSLAWEGVKSNSSIIPSGRAVSAKLKAFGLRLGLLLS
QRLRMTVMQDDGEGGGRENTNKTKSEEEGESKDNGEEVNXVEHCDDSILLWANPFLQSYI
AAVHLSMSRAVPDRSFLQTLPFQTTVKGRRKPKREELELTQRFAVGLLFHNQTELRRLHS
YTETVFRDMVVSKQMLATKHIENLSYSELSPAQVLEACNYVYEASLTYEVGSGIPSSRML
THLAGNLPEFLTFCGVSLSPPDVFTVQNALQRGGAEGKSFCLDLEDSGIWICGLRALTSL
NNIKTYRACIADVITLWEHLEQSDEKGLLQGAVSKFKIHPLKATQVCHIEHLEKLVNIHV
HKRLSESSRQSDSILAEGVPAVKELYKLEFELDPENGPLALPKFWDLLPGLQNLQHLDLE
NSKIGDKGAEKLATALVSLGCLEILNLSQNCIGDEGVKKLAPSLKDLPKLHCLSLYSNVI
SDEGSESLAAXLPHMASLTELDIKYNKMTDVGAQSLGASLRSCKKIKTLRMWNQCIPYGV
FERLQQQDSRILWH
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atggctcaattttcggaggtgttggaacaggtgcggtctgttttggcctgggcttctcct
gccgaggtccaggttctgctggatggtctggtggaggacagaattacctctgaggcaaat
gactttcacttcagcctcagactcagtgacagaaaagcagaaccgcagagcagtacagaa
ccaatacagaagcccataagtgatagtgaaagtgtgcatagagggaattttggaaaccag
gaggagtggttagagcatgtagaagaagcagctgcagtaaacattcctctatggaaggac
tatgaacaaggacaacagatgttgcaggcaatgattcctctggagacgatgttctcttca
atgagagacgacgtggtgtcggacagagaagccttccaccctgattgggatgtggaagag
gaaaccgatcttgcaactgcttgcaggatgctcgatgcaagcaccgatgactctgagttg
tcagagaccatctcttcagatagagccgaacagaaagggaataatttctcaacagtcgac
ctggctgaactgaacaccagtctgtttagagtcgccggagcagcaggaaaygtttcacct
gttgaagcctgttcaggcacgggaacaaacagcagtacctgcattcaagagagccggtcc
gatgttttctggcaggataacaagacagcagacgtattggataacctgtccagcttaaca
gatgcattcagtagatcattttctgcaataccaaaaactacttttaggcatctgctttct
tctggtgcttctcaggacactaaaacagatgaatattttcactccaacacttgttgcttg
gcggaggggattagagaagatgaattcaggtcaacatcctgcgacaatggaataagagac
attcttgacagtatggatttgctccgggatgccaagatgcaggagtttgaccaggacttc
cttattcctgacttgttaccagaggatttaagtgaattgttgaatgatgaatgcttcgat
gagatctgcaagtatggttgttttgaagacttcctcagcgattgtgagactcccacgcta
ctcaaggtccctgatttacccatccccgcttcacccatcccccaccgtgagcctcagacg
atcaaacaaccaaagaataagagaaaaagaccgagagtttctcacctcaccaaaaagaat
cccaccgcaaaaagagcaaaagtaacagatcaaccagtcaccccagagacaaatgatgag
ccgcccatcactccaggtgctgacgcagtatctgtgctaactccagagccagagagagag
ctccccaccacaccaccactgcttcaggtctatccatccccaccggctgctcccatcccc
atccagttcattactctgccagaaaactcaggataccaggtggtccagttgtcctctccg
cctcctcctatcattgggcttccactccccaacatgacagctacaccgacatatatcata
gttcctgctaccccaccaccctgtaaacgccaggtgcccccactctctccagtgaatggc
accatagcacctgttttgatgagttctttcccgcctggttctctgtcagatatgaccagc
aaagacgtatcccctcctccatcccccgagactgaagtgtccccctgtaaggaatcacca
aagtccccagctgtggttaaaattccacagggtgtaaaagactatattcagcaatacaag
gcacacatggctgaaacctgccaagttatggaggaatatctgagcctgaacgatcattac
atagatgtgcaagtgagcaggagagagatcattcgctcaggaaaaaacacaaacagaagt
ctggacaaggatcttattgtcattggggacayagatcgccaaaaaagctcagtggaacag
agtcggatcttccaaagcctaaacggggacaaatgtaacaaacgctacattttgctgttt
ggaaatgcaggcatgggtaaaaccacgctaatcaagaagttgtgttttgattggtctaaa
gactgcatcccccagtttgattttgtcttcttattagatggcaagaagctcactttagga
gagccagcctatagccttcaaacgctcctgctcaacctttcctcctacgcttccccctac
acagactctggggaagtatatgcgcaaatacttgcagcccagaaacgggttcttatcatt
tttgacgggtttgatgagttgcgagactatgaaacattgctccagactctggaaaaagac
ttggtaacgtcactgcagagagacggcaaggtgcagggcttcacagtcaagcagctcttt
tctggcatccttcaaagagtattacttcctgggtgcacgcttctgctcgccacacggccg
agaggtaccgccacacagctgctgcgacgcacagacagccttctggaggtgtgtggtttc
agtccaacaaacgtagagacgtacttgtccaagtacttcacggatcctatgctcagggaa
tctgctgtggactgcctaaaagctagcagctacctgaaactactctgctggaatcctgga
ctctgtcacttggtgtgcatggttctggagcagtccaaaccttcagagatcttaccaaga
actctaaccgggctctgtcatgatgtcttgtgtctaaaactagaaaaagacagaggaagc
acgcagttgcccaatgaaactcaggagcaatctgcacaagaagccccaacagaaaactca
aacaattctcaagcggggaaaggttgcaaaactaatccaaaaaagtccagaggagtacgt
cagagtgcccgttgctcccagaaagcaaggaatgcaaagggagaggggggacatcaagaa
aaagtggacgaggcgaatgttttagaggacgcagacagaaaagaagacaaagagttgttg
ttccagctgagctctttggcctgggagggagtcaaatcgaattcttcaatcattccctca
ggaagagccgtatctgccaaactgaaggcgtttggcctcaggttggggctgctgctttct
cagcgcctgaggatgactgtcatgcaagatgatggggagggaggaggacgagagaacaca
aacaaaacaaaaagtgaggaagaaggagaaagtaaagacaacggggaagaggttaaccas
gttgaacattgtgatgacagcatcttgttgtgggccaatcctttccttcagagttatata
gctgccgtccatttgtctatgtcaagggctgtccccgatcgttcctttctccagaccctc
cctttccagaccacagtcaaaggccgacgaaaacctaaacgggaggagcttgagctcact
caacgattcgccgtgggcctactgttccacaatcagacagaactgcggaggctccattca
tacacagagacagttttcagagacatggtggtcagcaagcagatgctggccacaaaacac
atagaaaatctttcgtacagtgaactgagcccggctcaagtcctggaggcatgcaactat
gtttatgaagcaagtctgacgtatgaagtgggcagtggaatcccctccagcagaatgttg
acccatctggcaggaaatctgccagaattcctgacattttgtggagtttccctcagtccg
cccgatgtgttcactgtgcagaatgctctccagcggggcggagctgaaggcaaaagcttc
tgcttggatctggaggactcggggatatggatttgtggacttagagctttgacgagtctc
aacaacatcaaaacgtacagggcttgcatcgccgatgtcatcaccctttgggagcacctg
gagcagagtgacgaaaarggacttctacaaggagcggtgtccaagttcaagatccaccct
cttaaggccacacaggtgtgccacatcgaacacctggaaaagctggtgaacatacatgtg
cacaagaggctgtcagagagctccagacaatcagattccatcctagcagagggggtaccr
gcagtcaaagagctgtacaagttggaatttgagcttgatccagaaaacggtcccttggct
cttcccaagttctgggatcttctgccagggctacaaaacctgcagcacctcgatttagag
aatagtaagatcggggacaaaggagcagagaaactggcgactgcattagtgtccctcgga
tgtctggagatactaaatctgtcacagaattgtatcggagacgaaggagtgaagaaacta
gctccctcactgaaggacctgcccaaactacactgtttaagcctttacagtaatgtgatt
tcagacgaaggatcagagagtttggcagcagytctccctcacatggcttctctaaccgag
ctcgacattaaatataacaagatgacggatgtcggcgctcagagtttgggagccagtttg
agaagttgtaaaaagattaagacattaaggatgtggaaccaatgtattccatatggagtg
tttgagaggcttcagcagcaggacagccgcatcctttggcattaa
DBGET
integrated database retrieval system
