Austrofundulus limnaeus (annual killifish): 106516559
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Entry
106516559 CDS
T06063
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03020
RNA polymerase
alim04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106516559 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
106516559 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106516559 (polr3a)
Enzymes [BR:
alim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106516559 (polr3a)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
106516559 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RasGEF_N
DUF3654
Motif
Other DBs
NCBI-GeneID:
106516559
NCBI-ProteinID:
XP_013862424
UniProt:
A0A2I4B3U5
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGIKSAEQMRKQAHIQVVSKNLYSQDTKRTPLAYGVLDHRM
GTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSIMLTKE
DKQQFIDYLKRPNLAYLQKRGLKKKISDKCRKRTTCLNCSAYNGPVKKCGLLKIIHEKYK
TTKKVVDSFVSEFLQSFDTAMEHNKLMEPLLSRAQENLNPLVVLNLFRRIPAEDIPLLLM
NPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRVTG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPDVHPGANF
IENRTNKVKRFLKYGNREKIAQELRFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAIMKPVALWTGKQI
FSMILKPNKDCPVNANLRTKGKQYCGKGEDLCSNDSFVVIHNSELMCGSLDKGTLGSGSK
NNIFYILLRDWGQLEAANAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLKAKQDLLDDG
YKKCDEYIEALATGKLQQQPGCSAEETLEALILRELSVIRXRAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPSQSEPALSQNELVLTADKIMKREDFLC
CGDSFLQDLTGTGSEKYLEEIKKFITTMSERIKKTRDKYGINDNGTTEPIVLYQLDRITP
TQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPANIAVHGEAVVCVSPQENSKSSMYYV
LQSLKEELPKVVVQGIPEVARAVIHIDEQSGKNKYKLLVEGDNMRAVMATHGVNGSRTTS
NNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADR
VPTPVTRPLLFDSTDFHIPLIA
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagcaattcagagagacggatgtggccaaaaaaataagccacatctgcttc
gggatcaaatctgcagaacaaatgagaaagcaagcccacatccaggtggtcagtaagaat
ctgtacagccaagacaccaaacgcactcctctggcctatggagtgttggaccaccgcatg
ggaactagtgagaaggacaggccgtgtctgacatgtggaaagaatctggcagattgttta
ggacattatggctacctggatttagagctgccctgttttcatgttggttatttcaaagcc
atcataggaatcttacagatgatttgcaagacatgttcaagcatcatgctgacaaaagag
gacaaacagcagttcatagattacttgaaacgacccaacttggcttatcttcagaaacga
gggctgaagaagaagatctctgataaatgccgyaaaagaacaacctgtctgaactgctct
gcttacaacggacctgtaaaaaagtgtggcttgctgaagatcattcatgagaaatataaa
acaaccaaaaaggtggtggattcttttgtgtctgagtttctgcagtcgtttgatacagcc
atggaacacaacaaactcatggagcctctgctgtcaagagcacaggaaaacttgaaccct
ctagttgttctcaacttgtttcgaagaattcctgcagaagacatcccsctgctgctgatg
aacccagaggcaggaaagcctgcagatctcatcatcactcgtctcctcgtgcctcctctc
tgcattcggccctctgtggtcagcgacttgaagtcgggcacaaatgaggacgacctcacc
atgaagctgacmgagataatctttcttaatgacgtcatcaaaaagcatcgagtgacggga
gctaaaacccagatgatcatggaggactgggacttcctgcagctacagtgtgccctttat
atcaacagcgaactttctggcattcccctcaacatggcccccaaaaaatggacccgaggc
tttgtgcaaagactaaagggaaagcaaggtcgattcagaggaaacctctcggggaaaaga
gtggacttctctggccgaaccgtcatctcccccgacccaaacttgaggatcgatgaggtg
gccgttcctgttcatgtggccaaaattctgacgtacccagaaagggtaaacaaagctaat
ctggaactgatgaggaaactggttcgtaacggtcccgatgttcacccaggagccaacttt
atcgagaaccgtacaaacaaagtaaaacgatttttgaagtacgggaaccgtgaaaagatt
gctcaagagctgaggtttggtgacgtagtggagaggcacatgatagacggagacatcgtc
ctctttaatcgacagccttctcttcacaaactcagcatcatggcccacattgccagagtc
aagccgcacagaacgtttcggttcaaygagtgcgtctgcacgccgtacaacgccgacttt
gacggcgatgaaatgaatcttcatcttcctcagactgaagaagccaaagcagaggctctg
gtcctgatggggaccaaagccaatctcgtcacaccaagaaacggcgaacctctgattgct
gccattcaggactttctgacaggtgcatacctgttgacgctgaaggacaccttcttcgac
agatcaaaagcttgccagatagtggcatcaattcttgtgggtaaagatgaaaaagtcagg
atttctcttcctcacccggctattatgaagccagtcgcactgtggacgggcaagcagatc
ttcagcatgattctgaagccgaataaggactgtccagtcaacgcaaacctgcggacaaag
ggaaaacagtactgtggcaagggagaggatctctgctctaatgactcatttgttgtgatt
cacaacagtgagctgatgtgcggtagcttggacaaaggtaccttgggatccggctccaag
aacaacattttctacattttgctgagagactgggggcagctggaggctgccaacgccatg
tcccgcctggcaaggctagctcctgtgtttctctccaatcgggggttttcgattggaatt
ggtgacgtgacgcccggtcagggtttgctgaaggccaagcaggacctactggatgacggc
tacaagaaatgtgacgagtacatcgaagcgttggccacgggaaagctgcagcagcagcca
ggctgctcagccgaggagaccttggaggccctcattttgagagagctttctgtgatcaga
gamcgagctggcagcgcctgtctcagggagctcgacaagagcaacagccccctcattatg
gctctttgtggttccaaaggatccttcattaacatctcgcagatgatcgcctgtgtgggc
cagcaggccataagtggctctcgagtccctgatggttttgagaaccgctccttgcctcac
tttgaaaaacactcaaaactgcctgctgctaaaggctttgtggccgacagcttctattct
ggtctgacacccacagagttcttctttcacaccatggctgggcgagagggtctggtggat
actgcagtgaaaactgcagagactggatacatgcagaggcgtctggtgaagtcgctggaa
gatttgtgctcgcagtacgacttgacggttcgcagctccaccggtgacatcatccagttt
atttatggcggcgatggtctggaccccgctgcaatggaaggaaaggatgagccgctggag
tttaagagagtcctggacaacataagggctgtctatccgagtcagagcgagcctgccctc
agtcagaacgagctcgtcctcacagcagataagatcatgaaaagagaggacttcttgtgc
tgtggagacagctttttacaggatttaacagggactggctcagagaagtacctggaggag
ataaagaagttcataacgaccatgtccgaaagaatcaagaagaccagagacaaatacggc
atcaatgataacggcactactgagccaatagttctttatcaactggaccgcattactcca
actcagctggagaagtttcttgaaacctgcagagacaagtacatgagagcccagatggag
ccgggctcggccgtaggggccctgtgcgctcagagcatcggagagcctggtactcaaatg
acgctgaaaactttccacttcgctggtgtggcatcaatgaatatcactctgggagtccct
cgcatcaaggaaatcatcaacgcctccaagaacataagcacccctataatcacggctcat
ttggacgttgaagacgatgccgacttcgccaggctggtcaagggaaggattgaaaaaacc
ctacttggagagatttcagagtacattgaagaagtttttcttccagacgactgcttcatc
cttgtgaaattgtctctggagagaattaggctgctgcgtttagaggtgaatgcagaaacg
gtgcgctactctatatgcatgtctaaactccgggtgaagcccgccaacatcgccgtgcac
ggtgaggcagtggtctgtgtgtctccacaagagaacagcaaaagctccatgtactatgtg
ctgcagtcattaaaagaagaacttcccaaggtggtggtccagggaatccccgaggtcgca
cgggccgtcattcacattgacgaacagagtggaaagaacaagtacaaactcttggtggag
ggcgacaacatgagagccgtcatggcaacgcacggcgtcaatgggagtcgcaccacttct
aacaacacgtatgaggttgagaagactttgggtattgaagctgccagatccaccatcatt
aatgagattcagtacaccatggtcaaccacggcatgagcatcgaccggcgtcacgtcatg
ctcctcgcagatctcatgtcctacaagggagagatccttggaatcaccagatttggtttg
gccaaaatgaaggaaagtgtcctcatgctggcttcttttgagaaaacagccgaccacctc
tttgatgctgcctactttggacaaaaggactctgtctgcggggtgtctgaatgcatcatt
atggggattcccatgaatattggaacaggactgtttaagctccttcacaaagccgacaga
gttcccactcctgtcaccaggccgcttctcttcgacagcacagacttccatatacctctg
atcgcatag
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