Austrofundulus limnaeus (annual killifish): 106516619
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Entry
106516619 CDS
T06063
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106516619 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alim03400
]
106516619 (msh2)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106516619 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Phage_int_M
AAA_22
Motif
Other DBs
NCBI-GeneID:
106516619
NCBI-ProteinID:
XP_013862520
UniProt:
A0A2I4B454
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFIFSMPEKPDTTFRVFDRNDYYTVHGKDAMFAAKEVFKT
NGVIKYLGSGSRKLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIEYKA
SPGNLTQLEEILFGGGTGAEGCAGVVAVRFATGADGQRVVGVGYVDAAQRKMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGECSADGSKLREVVQRGGMLVSDRKKAEFSSKDIVQDL
NRLLRSKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTALELGQYMR
LDHAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVSQWIKQPLMDKTRIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRQSANLQDCYRVYQAVSQLPALIAAL
ERHSGSYQVLLQAAFTSPLTDLQSDFTKFQEMIETTLDMNQIEHHEFLVKASFDPVLSEL
REKMDALEKSMQAVLNGAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQALNDVAAQ
LDAVASFAAASVSAPIPYVRPRILDGGCRRLELLQARHPCMETDADTAFIPNDITFVQGE
KSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAEMSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATERSLVIIDELGRGTSTYDGFGLAWAISEHIASEIGCFCLFA
THFHELTALAAQQPAVHNLHVTALTSHDTLTMLYRVRAGVCDQSFGIHVAELACFPVAVL
AAAKEKAEELEEFQEPAGDHLKLGEEPEAKRRRSDKQVGETLIQDFLQKVKSLPVATMTD
EEVKEALRRMKQELATKNNTYISEILARCLPVKT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacctttccatggacagtgcggccgagcacggcttttta
aactttattttctccatgccggagaaaccggacactacattcagagtatttgaccgaaat
gactactacaccgtccacgggaaggacgccatgtttgctgcgaaggaggtttttaagacg
aatggggtcatcaagtatttgggttcaggaagtcgcaagctggagagtgtgatcctgagc
aagctgaactttgaagcctttgtgaaggacctgttgttggtgaggcagtacagagtggag
gtgtacaggaaccacagcaagagcagcaaagagcacgactggaggatcgaatataaggcc
tctccaggaaacctgactcagttggaggagatcctgttcggcggtggaaccggagcggag
ggctgcgcgggggtcgtcgcagtgcgatttgcgacgggagccgacgggcagcgcgtggtc
ggcgtcggatacgtggacgcggcccagaggaagatgggcgtgtgcgagttcccggacaac
gagatcttctccaacctggagtccctgctggtccagatcagcccsaaagagtgtctcttg
gctcagggcgaatgcagcgccgatgggagcaaactgcgcgaggtggtacagcgcggcggt
atgctggtttctgacmgaaagaaagcagagttcagcagcaaggacatagttcaggatctc
aacaggctgctgagatctaagagaggagaaaccgtagcgagcaacacactacctgaactg
gacaagcaggtggccatgtcctgtttggctgcagtggtgcgtttcctcgagctgctttct
gacgagtccaacttcaactcttttagtctcactgctctggagctcggtcagtacatgagg
ctggaccacgccgccgtcagggctctgaacctcttccagggttcacctgatgacaccagc
ggagctcattcattggccggtttgctgaacaagtgtcgaactcctcagggtcagaggctg
gtcagtcagtggatcaaacagccactcatggacaaaaccagaatagaagagaggctggat
ctggtggagagttttgtgtgcgactcggagctcaggcagacctgtcaggaggatttgctg
cgccgcttccccgaccttcaccgcctggccaagaagtttcaccggcagtctgcaaacctg
caggactgctaccgcgtgtaccaggctgtgagccagctccccgccctcatcgcagccctg
gagagacactcaggcagctaccaggtgctgctgcaggcagcgttcacctctcccctcacc
gacctgcagtcagatttcacaaagtttcaggagatgatcgaaaccacgctggacatgaac
cagattgaacaccatgagttcctggtgaaggcgtcgttcgacccggttttgagcgagctg
agagaaaagatggacgcgctggaaaagagcatgcaggctgtgctgaacggcgcagccaga
gaattaggtcttgaagctggtaagacggtgaagctggagtccaacgccgtgctgggcttc
tacctgagagtcacgtgcaaggaggagaagagcctgaggaacaacaagaagttcaccacg
ctggacgtgcagaagaacggcgtgcgcttcacgaacagcaagctgagctctctgaatgag
gagtacaccaagagcagagaggagtacgaggaggcccagaacgccatcgtgaaggaaatc
atcaacatcgcctcaggttacgtggatcccctccaggctctgaacgacgtggcggcgcag
ctcgacgcggtggccagctttgccgcggcgtccgtctccgctcccatcccgtacgtccgg
ccccggatcttggacgggggctgcaggcgcctggagctgctgcaggcccggcatccctgc
atggagacggacgcggacaccgccttcatccccaacgacatcaccttcgtccagggcgag
aagagcttctacatcataacaggaccaaatatgggcggcaagtccacgttcatccggcag
gtgggtttgatcgctctgatggcacagatcggctgcttcgtgccgtgcgagaaggcggag
atgagcgtgattgacagcatcctggctcgagtgggagccggagacagccaggtgaaaggc
gtgtccaccttcatgtctgagatgttggagacggctgccatcctgcgctcggccacggag
cgctcgctcgtcatcatcgacgagctcggcagagggacgtccacgtacgacggcttcggg
ctggcctgggccatcagcgagcacatcgcctccgagatcggctgcttctgcctgttcgcc
acgcacttccacgagctgacggcgctggcggcgcagcagcccgccgtgcacaacctgcac
gtcacggccctgacgtcgcacgacacgctcaccatgctgtacagagtcagagcaggcgtg
tgtgaccagagttttgggattcacgttgctgagttggcgtgcttccctgtggcggtgctg
gcggcggcgaaggagaaggcagaagagctggaggagttccaggaacctgcaggagatcat
ctgaagctgggggaagaaccggaggccaagagacggcgttcagacaaacaagtaggagaa
accctgatccaggacttcctgcagaaggtgaagtctcttcctgttgccaccatgactgac
gaggaggtgaaggaggcgcttaggagaatgaagcaggagctggctactaaaaataacaca
tacatcagtgagatcctcgctcgctgccttcctgtaaaaacctaa
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