Austrofundulus limnaeus (annual killifish): 106516893
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Entry
106516893 CDS
T06063
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106516893 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106516893 (ndc1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106516893 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
106516893
NCBI-ProteinID:
XP_013862934
UniProt:
A0A2I4B5B4
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MMFSTETSCWFIRKVICWRATASIAWSVLLLPPTTAVFVILSRFSLFHPFQTISECLSLL
MSASSVFSLILLGGVIIMAGFLTLEYYTVIPTIACSKIALLGQLLHPRQFINSLAHCLMG
IIVGWCCAITIGCRYEMLGYPCKNSDGYPQMCVNEYHLIILLAGAFVGFSHSLLGVIHNI
NYISFQTVQQYKYFRFKGSLPLVVMCSATQAFYSIKNYVVLYFFLGYIPRAWICKTLNLH
LDSSIHPLDSIAGLLDLSLLYHLWISATFLLFTWYITLLLFRIFVTEVYTFPVQSSFTED
SHQCLPKVITEKQPMILKFLALQDLALLSQHSPSRRSEVFSLSQPGGHPHNWNAISKECL
ALLADLTQRLVAYHETVATNGRAKTLSNGSERKISSETSSTEDMMSPRPTFLMKTPTSVF
ARSVGRSSQSPLTIPFTPDLDSPFASPALRRLAAAPEQGSPWHGSVQSPHVMRKAPKLWS
TSTADSLFNGSPEPTPASVPSPKKEATKPSFLVQFLQNRKEQVKSFLAKRVLIMYLFTKL
PEASSQALFADSQAHIWALEGLSYLVQASFTEDQFGVVQTTLPSILSSMLLLQEAVDRHF
KLPHASSKPVRSTSTMGDSTYKTLRFALRATLKTALYRITTTFGDHLKAVEMSAEHRKRL
QQFLEYKE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatgttttctacagagacaagttgttggttcatccgcaaggtaatttgctggagagct
acagccagcatcgcttggtctgtcctcctgttaccacccaccactgcagtttttgtgata
ctcagcaggttcagtctttttcatcctttccagacaatatcagaatgtttgtctctgctg
atgagcgccagttcagttttctccctcatactgcttggtggagtgatcatcatggctgga
ttcctgaccctggagtattacacagtaatcccaactattgcctgctcaaaaatcgcattg
ctgggtcagctgctccaccctcggcagtttatcaactccctagcccactgcctcatgggt
ataattgtaggctggtgttgtgccatcaccataggttgcagatatgagatgcttggctac
ccatgcaaaaatagtgacggttatcctcaaatgtgtgtgaatgagtatcatctcatcatt
ttgctggcgggggcctttgttggattttctcacagtctgcttggagtgattcacaacata
aattacatctcctttcaaactgttcagcaatacaaatactttcgcttcaaaggatccctg
ccattggtggtgatgtgcagcgccactcaagcattttactctatcaagaactacgttgtt
ttatatttctttctaggatacattccaagagcatggatctgcaaaactctgaatctacat
ttggacagctccatccaccccctcgacagcattgccggactgctggacctttccctgctc
taccacctctggatcagtgccaccttcctcctcttcacgtggtacatcacactgctgctc
ttcaggatttttgtcactgaggtgtacacttttcctgtgcagtcgtcctttacagaagat
tcccaccagtgtcttcccaaagttattactgagaagcagccaatgatcttaaagtttcta
gctctgcaggacttggcactattgtctcagcactctccatcacgacgcagcgaagtcttc
agtctcagtcagccaggtgggcatcctcataattggaatgccataagtaaagagtgtctg
gctcttctggctgatctgactcagagacttgtggcctatcatgaaactgtagcaaccaat
ggcagagcgaaaacactgtccaatgggagtgaaaggaaaatctcatctgaaacatcaagt
acagaagacatgatgagtccaaggcccacttttctaatgaaaactccgacttcagtcttt
gcccgttccgttggaagaagctctcagagcccgctgacaataccgttcactcctgacctg
gacagcccttttgcttctcccgccctgcgacgtctcgctgcggcaccggaacagggctca
ccatggcacgggtcagtgcagagcccacatgtcatgagaaaagcaccaaaactctggtcc
acttccacagcagattcccttttcaatggcagccccgaacctaccccagcatcggttccc
agtcccaagaaggaagccaccaaaccaagttttctggttcagtttcttcagaacagaaaa
gaacaggttaaaagtttcttggcaaagcgagtgctgataatgtatttgtttaccaagctc
ccagaagcctccagtcaggctctttttgctgacagtcaggctcacatctgggcattggaa
gggctgtcttatcttgttcaagcctccttcacagaagatcagtttggggtggttcaaact
acattacccagcattcttagctctatgctactcttacaagaggctgtggaccgacacttc
aagctgcctcacgcctccagtaagcccgtcaggtcgaccagcaccatgggagactccacc
tacaaaacactgcgctttgctctcagggccacactcaagactgccctttacaggataaca
accacgtttggagaccacttaaaggctgtggagatgtctgcagagcaccggaaaagattg
cagcagtttttggagtacaaggagtga
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