KEGG   Austrofundulus limnaeus (annual killifish): 106517161
Entry
106517161         CDS       T06063                                 
Symbol
smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
alim  Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:alim00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:alim03041]
    106517161 (smu1)
Spliceosome [BR:alim03041]
 Complex B
  Other components
   Complex B specific factors
    106517161 (smu1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 WD40_Gbeta WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_ACSF4 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_Vps41 NBCH_WD40 LisH_TPL Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N RMC1_N TFIIIC_delta Beta-prop_IP5PC_F Beta-prop_LRRK2 LisH VPS8_N Beta-prop_WDR11_2nd DUF7165 PD40
Other DBs
NCBI-GeneID: 106517161
NCBI-ProteinID: XP_013863331
UniProt: A0A2I4B6F9
LinkDB
Position
Unknown
AA seq 511 aa
MAVELEPADVLRLIMQYLKENNLYRTLSTLQEETTVTLNTVESIESFMEDINRGHWDSVL
MAIESLKLPDNTLIDLYEQVVMELIEMREAGAARSLLRQTDPMIMLKQTQPDRYTHLENL
LTCSYFDPREAYPKGSSKEKRRRAIAEALVREVSVVPPSRLVGLLETVSNVRRQQHPRYL
SPDTTINTSCSKEQKQEKEAFPTQLYRHIKFGQRSHVECARFSPDGKYLITGSVDGFIEV
WNFNSGKISKDVKYQAQDSFMMMDDAVLCMCFSHDSELLATGAQNGKIKVWKIQSGLCVR
RFEHAHNKGVTCLSFSTDSNQILSASFDQTIRIHELRSGKMLKELKGHSSFVNDASLTRD
GSHVISASSDGAVKIWNMKSCECVXTFKCPSPASDVPVNNVIPLPQNPEQFLVCNQTNTV
VIVSMRGQTVKTFCSERAGAAGFVCCTLSPRGEWIYCVGEDCVLYCFNCTSGRLEKTLTV
HERDVIGIAHHPHENLIATYSEDGLLRLWKP
NT seq 1536 nt   +upstreamnt  +downstreamnt
atggctgtggagctggagcctgcagacgtgctgcgtctgataatgcagtacttgaaggag
aataacctgtaccgcacgctgagcaccttacaggaggaaaccaccgtcaccctcaacacg
gtggagagcatcgaaagctttatggaagacataaacagaggccactgggactcggttctg
atggccatcgagtccctcaagctgcctgacaacacgctcatcgacctctacgagcaggtt
gtgatggagctgatagagatgagggaggcgggagccgctcgttctctcctcagacaaacc
gacccgatgattatgctgaagcagacccagccagacagatacacccacttggagaatttg
ctgacgtgctcttactttgaccctcgtgaggcgtacccgaaaggcagcagcaaagagaag
cggcgcagagcgatcgcagaggctttggtgagggaggtcagcgtggtgccgccttctcgc
ctcgttgggctcctggaaacagtcagtaacgtgagacggcagcagcatccacgctatctc
tcccctgacacaaccatcaacacgtcctgcagcaaggagcaaaaacaggagaaagaagcc
tttccaacgcagctgtaccgccacataaagtttggacagaggtcacatgtggagtgtgcc
cgtttctcgcctgacggaaagtatttaatcaccggatcagtggacggcttcatagaggtc
tggaacttcaacagtggaaaaattagcaaggatgtgaagtaccaggcccaggacagcttc
atgatgatggatgatgctgtgctctgtatgtgcttcagtcatgactcagagctgctggca
acaggagctcagaacggcaaaataaaggtgtggaagatccaaagcggcctgtgcgtgcgc
aggttcgagcacgctcacaacaaaggcgtgacgtgtctgagtttttccacggacagcaac
cagatcctcagtgcctcttttgaccaaaccatcagaatccatgagctgaggtcagggaag
atgctaaaggagttaaagggccattcatcgtttgtaaatgatgcttctttaactcgtgat
ggttctcacgtcatcagcgcatcctctgatggagctgtgaagatctggaacatgaaatct
tgcgagtgcgttcamactttcaagtgtccgtcaccggcgtcggacgtgccggtcaacaac
gtgattcctcttccccaaaaccccgagcagttcttggtttgtaaccagaccaacacagtg
gtcatcgtgagcatgcgtggtcagactgtgaagacgttctgttcggagcgagcaggagca
gcaggctttgtgtgctgcaccctgtcgccccgcggggagtggatctactgtgtgggagaa
gactgtgtgctctactgcttcaactgcacatcaggaagactggagaaaactctgactgtt
cacgagagagacgtaattggcatcgctcaccacccgcatgagaacctgattgccacatac
agtgaggacggcctactgaggctttggaaaccatga

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