Austrofundulus limnaeus (annual killifish): 106517238
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Entry
106517238 CDS
T06063
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alim03036
]
106517238 (chd9)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
106517238 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
106517238
NCBI-ProteinID:
XP_013863415
UniProt:
A0A2I4B6Q4
LinkDB
All DBs
Position
Unknown
AA seq
2998 aa
AA seq
DB search
MDFFDDPNLFVGGLEGLEEDGFSSAPSLVDELNLSADFEPVQVASLGTRKHHDLMSPASS
QQGLPSYNQPMTQYIGTKAQNSVGQAFSGSRSTGCNMIAEQHGQYHNATISQIPQSNGLF
CNNGSPVWSSHDQNGNVFHPLSQQQQQVCHQQLHNQQLHVRQHPPHHVGHHQPEEQQHRM
RLQQLQQRHNHPQQLLNQHQQIGTQNISLLQQQHHNFSFHQGGQASNHQQLLHSQQQVQH
RLPAREPQFHSRSLPNKSCLESQNASQSGTCLQQQGSYQLPRRGQAFSGSGLEDSHMSFP
IHSSSVVHSLTTCSANAYQPTEYPTYPGEPEIPSLSQQSLSSASTCRPIVSAPHTSTVPG
LSEATCHFQSTGLMSQLHSRTTSDQADECPFRALRCPGETQGKSSEMFGESVSYPSIASQ
LPTEQPLSCRTINTNGYQAFGDDFLQSEAQDGDFEELEPPDLLPDLLPQLENDFREQNKS
SFSWIESSQKNGHEDRKPTSFESNEEKPRKNSNGPGSQVRVLSPTLKSSSSSSSSSSSSS
SPSSSSEKRTKRRKHHQMESPLQDKQEKANRIISEAIAKARQRGEKNIPRVMSPECFPSS
SAQFKAHRDYEHKGNRKARSKDKACRKACIVPSSKSKQKSKIGKIVIKIGKKKKQKPGSS
EEESDDDPPPRHSSKDDDSKRRSNRQVKRKKYAEELEARLSDEDVKVIVKAKKTNTGASK
EPAVQLFVENPTEEDAAVVDKIMSSRVVKKEISPGVVIEVEEFFVKYKNYSYLHCEWATE
QQLEKDKRIQQKIKRFKMKQAQRALFFTDMEEDPFNPDYVEVDRVLEVSYCEDKDTGEEV
VYYLVKWCSLPYEDSTWELKDDVDQSKIEEFEQLQAVKPDLRRMERPPANLWKKREQSRE
YRNGNTLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEMHRIGIKGPFLI
IAPLSTIANWEREFHTWTHLNVIVYHGSMISRQMLQQYEMYFRDAQGRVIRGAYKFQAVI
TTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTPLQNTV
EELFSLLHFLEPARFPSENTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPK
EETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQSNMPNLVNTMMELRKCCNHPYLIKGA
EEKILEDFREVYSPIAADFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDI
LEDYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC
IIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQS
MSGRDNSLGGGTGGGAVQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQILQRR
TKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMDMVNGRNSLVID
TPRVRKQTRPFSATKDELAELSEGESDSDDTKPKLRRNDRPNSYGRTECFRVEKNLLVYG
WGRWKDILNHGRFKKQLTEWDVESICRSLLAYCLVHYRGDDKIKSFMWDLIAPTEDGRTK
ELQNHLGLSAPVPRGRKGKKMKTQSSSFDIHKAEWLRKHNPEHMLQDDGYKKHLKHHCNK
VLLRVRMLYYLKQEVIGSQAQKVLDGVDSSEVKIWVPDPDHSELPALWWDAVADKCLMLG
VFKHGYEKYHTIRADPTLCFLERVGRPDEKAIAAEQRGNDFMDGDVDDPEYKPAPALIKD
DMEDDASSPGDLVVADNPGDAAPMTEGQTTYWPSPSVLTARLRRLITASQRFTKSRQILH
IHQVQSQSQQPMILSAPLCPLPPTLNDTLNPKMAAKIERQQRWTRREEADFYRVVSTFGV
VFDPNLGRFDWTKFRAMARLHKKTDESLQKYLCAFAAMCRRVCRLPPKEGDSAVDPSLNI
QPITEERASRTLYRVELLRQVREQVLRHPLLYERLRLCQMSSDLPVWWEVGTHDRDLLIG
AAKHGVSRTDYHILRDPELSFMTSQRNYSQMKAAPQQPRTSAPLLHPQYQAASSLMAGSV
VPPPAQRDADPCGLVPKVEPASEEEEEGKERQRESWSPSHPPATPTGLGEKPVSMASDSE
RQMVAARTKPLTPISTERKPKKASKRGRREARRGSETESDGSSSSSSSRSSSSSSSSSSS
SSHSGSSSSSSSSSCSSGSSSSSSSSSSSSDDSESEGEEAKKNVPAATSVKGFDEDSVAS
LSTTQDETQDPHVAENGVANNSSHPFQGGGYMLAASYWPKDRVIINRLDSICQAVLKGKW
PSPRRFYEPGGAVASFYTTKLLDNANSLSEDPSASPQGSKVTKHVAENKEFSVKLNDQEG
GLKLTFQKQGLPMKRPLESEEGPQAQQQYLARLRELQSASDTGLADITKPQSSYQTAPPA
LTDEMRLNGALDGQPLVKKRRGRRKNVEGMDLLFMNRNQVPTVPNQVASGWGGIGQVGLA
AAAVPGSSQSSSQVSADTETRVPVINLKDGTRLAGDDAPMRKDLELWLKEHPGFVADTGA
FIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKVGGAFAP
PLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRRPKNPL
AKAAAATPNPSASALGLNPLLNNGLLSGMDLTSLQAFQQNLQSLQSLQLTANLMGLPSDA
SNLAASNLAAMFPMMLSGMAGLPNLLGMSSLLGKPAQEGAGGSEERTKGTGEQSSAPSHT
SDTKGERTEGSNTTPSSTSSCASSATTTQSASAASAASSHPVPLNPLLLSGMLYPGMLLT
PGLNLPVSASQPQSSNDDPSSLPPAAPPSATSLSSAKETELPQAQRDGEEEEGKVPEEEA
LDDDDDDEEEEEEEEEEEETADQKENSGPESSLKAESSSSGSGSSSSSSDDSDSSDED
NT seq
8997 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttgatgaccccaacctctttgttggaggtttggaagggctggaggaggat
ggcttctcttcagcaccatcccttgtggatgagctaaatctcagtgctgactttgaacct
gtccaggtggcctcacttggcacaagaaagcatcacgacttgatgtcaccagcctcgtcc
caacaaggcttacccagttacaatcagccgatgacccaatacattggcacaaaggcacag
aattctgtggggcaagcattttctggttctcgtagcacagggtgtaacatgattgcagag
cagcatggccagtaccataatgccaccattagccaaatacctcaatccaatgggttgttc
tgcaacaatggaagtccagtgtggagcagccatgaccaaaatggaaatgtgttccaccct
ttgtctcaacagcagcaacaggtttgccatcagcaactgcacaaccaacaacttcatgtc
aggcaacatcctccacaccatgttggtcatcatcagccggaggagcagcagcacagaatg
cggctgcaacagctgcagcaacggcacaatcatccacaacagctgttaaaccagcaccaa
caaattggcacacagaatatctccctgctgcaacagcaacatcacaatttctcctttcac
caaggaggtcaagccagcaaccatcagcaattgctccattctcaacagcaggttcagcat
cgactacctgcaagagaaccacagtttcattccaggtctcttccaaataagtcatgtttg
gaaagtcagaatgcatctcagagtgggacctgcttgcagcaacagggtagctaccagttg
cccagaagaggtcaagccttctctgggtcaggactggaagactctcacatgtcatttccc
attcattcatcatctgtagttcactcactgacaacatgttctgctaatgcttaccaaccg
actgagtaccctacctaccctggagaaccagaaatacccagtctcagtcagcagtcttta
tcctcagcctcaacatgcagacccatcgtctctgcacctcatacatctacagttcctggg
ctatcagaagcaacatgtcatttccaatctacaggactcatgagccagcttcactctaga
acaacatctgaccaggcagacgagtgtcccttcagagcactacgttgtcccggagaaacc
cagggaaagtcgtctgagatgtttggtgaatcagtgagttatcccagcattgctagccag
ctgcccactgagcagcctctgagctgtagaaccatcaacactaatggataccaagctttt
ggggacgattttcttcaatcggaggcccaggatggagattttgaagagctggaaccacct
gaccttttgcctgacctgcttccccagctggagaatgattttagggaacagaacaagtcc
agcttttcatggattgaatctagccagaagaatggccatgaagacagaaaaccaacatct
tttgaaagcaatgaagagaagcctcgaaagaacagcaatggtcctggtagccaggtacga
gtcctcagtcccacgctgaagagttcttcatcctcctcctcttcatcatcatcttcgtcc
tcacccagctcctcatcggagaagaggacaaaacgaaggaagcatcatcagatggagtca
cctctgcaggacaagcaggaaaaggcaaataggataatatcagaagctattgctaaggcc
cgacagagaggagagaagaacattccgcgggtcatgagtccagagtgcttccccagctct
tctgctcagttcaaggcccatcgggattatgaacataaaggaaatcgcaaggccaggtcc
aaagacaaggcctgtaggaaggcctgcattgtaccctcctcaaagtccaagcaaaagtcc
aagattgggaaaattgtgattaagattgggaagaagaaaaaacaaaagccaggatcttca
gaggargagtctgatgatgatcctccccctcgtcactcatctaaggatgatgattcgaag
agacggtctaaccgtcaggtgaagagaaagaagtatgctgaagagctggaggccaggttg
tcagatgaggatgttaaggttatagtcaaagcaaagaaaaccaacactggagcatccaag
gaacctgctgttcagctttttgttgagaatcctactgaagaagatgcggctgttgttgac
aaaatcatgtcctctcgtgttgtaaagaaggagatttctccaggagtggtgattgaagtg
gaagaatttttcgtaaaatacaaaaactattcctaccttcactgcgagtgggccacagag
cagcagctcgagaaggacaagaggattcagcagaagatcaaacgcttcaagatgaaacaa
gcacagagggcgctcttcttcacagatatggaagaggacccttttaaccctgactatgta
gaggtagacagagtgttggaggtatcatattgtgaggacaaagacacaggagaggaagtg
gtgtactacctggtgaagtggtgctcactgccgtacgaggacagcacctgggagttgaag
gacgacgtcgatcagagcaagattgaagagtttgagcagctgcaggcagttaagccagac
ttgcgcagaatggaacggcctccagccaacctgtggaagaagagggaacaatcaagggaa
tacaggaatggcaacaccctcagggattaccagcttgagggggtcaactggcttcttttc
aactggtacaacaggcgcaactgcatcttagctgatgagatgggcctgggaaaaaccatt
cagtccattacgttcctggaagagatgcatcgaattggyatcaaaggacccttcctaata
attgcccccctgtctactattgcaaactgggagcgcgagtttcacacctggacccacctc
aacgtcattgtttaccatggaagcatgatcagcaggcagatgctgcagcagtatgagatg
tatttcagggatgcacagggtcgtgtgataagaggtgcatacaagttccaggcagttatc
accacatttgagatgatcctgggaggctgtcctgagctcaacgccatagagtggcgctgc
gtaattattgacgaggcccatcgtctcaagaacaagaactgcaagttgctagagggcttt
aagctcatgaacctggagcacaaggtcctgttgacgggcacccctctccagaacacagtt
gaggagcttttcagtctcctccacttcttggaaccagctcgcttcccttctgaaaatacc
ttcatgcaggagtttggagacctcaagacagaggagcaggtacagaaacttcaggctatc
ctgaagcccatgatgctgcgccgtttgaaggaggatgtggagaagaagcttgctcctaaa
gaggaaactattattgaagttgagctcaccaacatccagaagaaatactaccgggccatc
cttgagaagaatttctctttcttggccaaaggagctggtcagtcaaatatgcccaacctg
gtcaacaccatgatggagttaagaaagtgctgtaaccacccctacctcatcaaaggggca
gaagagaagatcctggaggacttcagggaagtatacagccctattgctgctgacttccac
ctgcaggcgatggtgcaatctgctggaaagttggtccttattgataaactgctgccgaag
atgaaggcaggaggacacaaggtgctcatcttctcccaaatggtgcgctgcctggatatc
ttggaagactacctcattcagaaaaggtacttgtatgagcgtatcgatggccgggttcgt
ggaaacctgcgacaggctgctatagaccgcttcagtaagcctgactcggaccgcttcgtt
ttcctcctgtgtacaagagctggtggcctgggaatcaaccttactgctgcagacacctgc
atcatctttgactctgactggaacccacagaacgacctgcaggcccaggctcgctgccac
cgcatcggtcagaataaagcagtgaaggtgtatcgactaatcaccagaaactcatacgag
cgtgaaatgtttgaccgcgccagcctgaagttgggcctggacaaagcagtgttacagagc
atgagtggtcgagataatagcctgggaggaggcaccgggggaggggctgtacagcagcag
ttgtccaagaaagagattgaggacctgttgcggcgtggtgcctatggggccatcatggat
gaggaggatgaaggggccaaattctgtgaggaagatattgaccagatcctgcagcgtagg
acgaagaccatcaccattgagtcagagggacgaggatccacctttgctaaagctagtttt
gtagcatccggaaaccgcacagacatctctctggatgacccaaatttctgggacaagtgg
gccaaaaaggctgacattgatatggatatggttaatggcagaaacagcttggtgatcgac
actcctcgtgtcaggaagcagacgagaccgttcagtgccaccaaagacgagttagcagaa
ctttcagagggtgaaagtgacagtgacgacaccaagcctaagctgaggcgaaatgatcga
cccaacagctacggtcgcacagaatgctttagagtggagaaaaacttgcttgtttatgga
tggggtcgttggaaggatattctcaaccatggtcgttttaagaagcagttgactgagtgg
gatgtagagtccatctgcaggtccctgctggcttactgccttgttcattaccgtggtgat
gacaaaattaagagctttatgtgggacctaattgctcccactgaggatggacgcactaaa
gagctgcagaatcacctgggtttgtctgctccggtccctcggggccggaagggtaagaag
atgaagactcaatcaagctcttttgacatccacaaggctgagtggcttagaaaacataac
ccagagcatatgcttcaggacgacggctacaagaagcatttgaaacaccactgcaacaag
gtgctgctcagggtcagaatgctctactatctgaaacaagaggtgataggaagtcaggcc
cagaaggtgctggatggcgttgactccagtgaggtaaagatctgggtgccagatccggac
cactcagagctgccagccctgtggtgggacgcagttgccgacaagtgtctgatgctcggt
gtattcaagcacggttatgagaagtaccacactatccgtgcagacccgaccttgtgcttt
ttagagcgtgtggggcgaccggacgagaaggccatcgctgccgagcagaggggcaacgat
ttcatggatggggatgtggatgatccagagtacaagcctgctccagcccttataaaggat
gacatggaggatgacgcctcctctcctggagatttggttgtcgctgataatcctggagat
gcagctccaatgacagaaggccagacgacctactggccctccccctctgtgttgacggct
agactgaggcgattgatcacagcctcccagcgcttcaccaagagccggcagatcctccat
atccaccaagttcagtctcagtcccagcagcccatgattctgtctgctccactctgcccg
ctcccccccacactcaatgacacgcttaaccccaagatggctgcaaagattgaacgtcaa
caaagatggaccagaagagaagaggctgacttctaccgggtcgtctccacttttggtgtc
gtttttgacccaaaccttgggcgctttgactggaccaagttcagggccatggctcggctg
cacaagaaaaccgacgagagcctgcagaaatacttgtgcgccttcgccgccatgtgcaga
cgggtgtgtcgcctgccacctaaagaaggagactccgcagtggatccgtctctcaacatc
cagccaatcacagaggagcgagcatctcgtaccctgtacagggtagagttgcttcgccag
gtgagggaacaagtgctcagacacccgttactctacgagcgcctcaggctgtgccagatg
agctcggacttgcctgtgtggtgggaggtcggtactcatgaccgggacctgctaatcggt
gccgcaaagcacggcgtcagtcggaccgattaccacattctgagagatcctgagctcagc
ttcatgacttcacaacgcaactacagccaaatgaaagctgcaccccagcaacctcgcaca
agtgcgcccctcttgcaccctcagtaccaggctgcttcctcgttgatggccggctctgtg
gtccccccacccgctcagagagacgcagacccctgtgggcttgtgcccaaagtggagcca
gcctcagaggaggaagaggagggcaaagaaaggcaaagggagagttggagcccttctcac
ccgccagcgactcccacaggtctgggagaaaagcccgtttccatggcgagcgacagcgag
aggcagatggtggcggcgcggaccaaaccgctcacgcccatctccactgagaggaaaccc
aagaaggccagcaagagaggccgcagggaggccaggcggggctccgagaccgaatcagac
ggctcctcgtcgagctcttcatcgcgctcctcttcatcctcgtcgtcctcttcatcttca
tcatcacattccgggtccagctcctcatcctcatcctcgtcttgttcttctggctcctca
tcctcgtcgtcatcctcctcatcctcatctgatgacagtgaaagtgagggagaggaagca
aagaagaacgtgcctgcagcaacgagtgtgaagggcttcgatgaggacagtgttgcctct
ttaagcactacacaagatgaaacacaagacccccatgtggctgagaacggtgtcgccaac
aactcctcccatcctttccagggaggagggtacatgctggctgcatcttactggccgaag
gatcgtgtgattataaacaggctggacagcatctgccaggcagtgctcaagggcaagtgg
cccagcccacgtcggttctatgagcccggaggcgcagtggcctccttctacaccaccaag
ctgctagacaacgccaacagcctgagcgaggacccctctgcttcaccacaggggtcaaag
gtgaccaagcatgttgcagaaaacaaggagttctcagtaaaactcaacgatcaggaggga
ggtctgaagctgaccttccagaaacagggtctacctatgaagagacccctggaatcggag
gaaggcccccaggcccagcagcagtatctggctcgccttcgagagctgcagagcgcatca
gacacaggcctggctgacatcaccaagcctcagagcagctaccagactgctcctccagcc
cttactgatgagatgaggctgaacggagctctggatggtcagcccctggtcaaaaagcga
agaggcagaagaaaaaatgtggaaggaatggacctgctcttcatgaacaggaatcaagtt
cctactgttcccaatcaggtggcctcaggatgggggggcattggccaggtgggcttagct
gcagctgctgtgccaggatccagtcagagctcgagtcaggtctctgcagacacagagacc
agggtccctgttatcaacctgaaagatggcacccgactcgcaggggatgacgcccccatg
aggaaagacctggaactgtggctgaaggagcaccctggctttgtggcagacacaggagct
tttatccctggtgtaaataaaatgcagatgcagttccacttccaggatgggcgacccaag
cagaaaaggcatcgctgcaggaacccaaacaaaatcgatgtcaacagtctgaccggagag
gagagggtccagataattaacaggagaaatgcccgcaaggtcggtggagcctttgctcct
cctctcaaagatctgtgtcgatttcttcaagaaaacccagaatacggagtcccgcctgaa
tgggctgatgtagttaaacaatcgggttacctcccagagagcatgtttgaccggatccta
acaggacccatcgttcctgaggaggtgagtcggcgaggacgtcgaccaaagaatcctctg
gcaaaggcggcagcagcaacgcccaacccatcggcctctgctctgggtttgaatcccctc
ctgaacaacggcctcctctctgggatggacctcaccagtctgcaggccttccagcaaaac
ctgcagagcttgcagtccctgcagctcaccgcaaacctgatgggactcccatccgatgcc
agcaacctggctgccagtaacttagccgctatgtttcccatgatgctctctggtatggct
ggattgccaaacctgctcggtatgagcagcttgctcgggaagccggctcaggaaggtgca
ggaggctctgaagaaaggacgaagggaacaggagagcagtctagtgccccctctcacact
tcagacaccaaaggagaaaggaccgagggctcaaacacgactccttcctccacgtccagc
tgtgcttcctctgccaccaccacacaaagtgcttcagctgcctccgcagcctccagtcac
ccagttcctcttaaccccttgttactctccggtatgctttacccagggatgcttctcact
ccaggccttaaccttcctgtgtctgcctcacagcctcagagctcaaacgatgacccttcc
agccttcctcctgctgctcctccctctgcaacctccctgtcatcagcaaaagagaccgag
ctgcctcaggcacaaagagacggagaggaggaggagggcaaggtgccagaggaggaggct
ttagatgacgatgacgatgacgaagaagaagaggaggaggaggaggaggaggaggaaacg
gcagatcaaaaagaaaacagtggtcctgaaagttcattgaaagctgagtcgtcttcatca
gggtctgggagctcttcctcatcctctgatgattcagactctagtgatgaagactaa
DBGET
integrated database retrieval system
