KEGG   Austrofundulus limnaeus (annual killifish): 106517289
Entry
106517289         CDS       T06063                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03030  DNA replication
alim03410  Base excision repair
alim03420  Nucleotide excision repair
alim03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106517289 (rfc4)
   03410 Base excision repair
    106517289 (rfc4)
   03420 Nucleotide excision repair
    106517289 (rfc4)
   03430 Mismatch repair
    106517289 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:alim03032]
    106517289 (rfc4)
   03036 Chromosome and associated proteins [BR:alim03036]
    106517289 (rfc4)
   03400 DNA repair and recombination proteins [BR:alim03400]
    106517289 (rfc4)
DNA replication proteins [BR:alim03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    106517289 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    106517289 (rfc4)
Chromosome and associated proteins [BR:alim03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    106517289 (rfc4)
DNA repair and recombination proteins [BR:alim03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     106517289 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    106517289 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_22 AAA_16 AAA_11 AAA_30 DUF815 Mg_chelatase AAA_24 AAA_19 SLFN-g3_helicase RuvB_N AAA_14 ResIII AAA_28 AAA_7 wHTH-PRTase_assc AAA_5 Cdc6_lid
Other DBs
NCBI-GeneID: 106517289
NCBI-ProteinID: XP_013863503
UniProt: A0A2I4B6Y5
LinkDB
Position
Unknown
AA seq 356 aa
MQAFLKGATQTSRPQKDKSAAGPSSEKRAKAVPWVEKYRPKCVDDVAFQEEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAATRELYGPELYRQRVLELNASDERGIQVIREKVKNF
AQLTVSGTRPDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRI
IEPLTSRCSKFRFKPLADQIQEERLLEICAKENLKYTKESISTLVQLSEGDLRKAITFLQ
SAARLSPDKEITDQVIIEIAGVVPSKMIDSLLQICLKGTFEKLEVAVGNMVDEGYAATQI
LTQLHDAILKQDIGDKQKSAIAEKMAVVGKCLADGADEYLQILSLCSVIMQQASQS
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgcaggcgtttttaaaaggagcgactcaaacgagcagacctcagaaagacaagtcagca
gcaggaccgagctcagagaaaagagccaaggctgttccctgggtggagaaatacagacca
aaatgtgtggatgatgtggccttccaggaggaggttgtagcagtgctgaagaagtcttta
gaaggagcagatctcccaaacctgcttttctacggtcctccaggaacagggaagacgtcg
accatcttagctgctaccagagaactttatggcccggagctgtacagacagagagttctg
gagctgaacgcctcggacgaacgagggatccaggtcatcagagagaaagtcaagaacttt
gcgcagctcaccgtgtctgggactcgtccggatgggaagccatgtcctccgttcaagatc
atcatcctggacgaggccgactccatgacggctccggctcaggccgctctcaggcggacc
atggagaaggagtctcgcaccactcgcttctgtctcatctgtaattacatcagcaggatt
atcgagccgctcacgtccaggtgctctaagtttcgcttcaagcctttggccgatcagatc
caagaagagcgcctgctggagatctgtgcaaaggagaacctcaagtacacaaaggagagt
atctcaacactggtgcagctgtcggagggagacctgcgtaaagccatcaccttcctgcag
agtgctgcccgcctcagcccagacaaggagatcaccgatcaggtcatcattgagattgca
ggggtcgtcccttccaaaatgatcgacagcttgctccagatttgtttgaaaggaacgttt
gagaaactagaagttgccgtcgggaacatggtggatgaaggttatgcagccacacagatc
ctgactcagctccacgacgccatcttgaaacaagacatcggagataaacaaaagtcagcc
attgctgagaaaatggcagttgtggggaagtgcctggccgatggagcagatgaatacctg
cagatattgagtctgtgttcagtcatcatgcagcaagcctctcaaagctaa

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