Austrofundulus limnaeus (annual killifish): 106517496
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Entry
106517496 CDS
T06063
Symbol
cnot6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106517496 (cnot6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106517496 (cnot6)
Enzymes [BR:
alim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106517496 (cnot6)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106517496 (cnot6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106517496 (cnot6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
106517496
NCBI-ProteinID:
XP_013863826
UniProt:
A0A2I4B7W9
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLSYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRPSTLFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILGCNADIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFFKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKELIEISSGKSLHGMDKQLLLVANA
HMHWDPEYSEVKLVHTMMFLSEVKNIVDLAARSFKLSTSGETNAIPLVLCADLNSLPDSG
VVEYLSSGGVDCTHKDFKELRYSDSLTKFNCNGKNSLSNGRITHGFKLKSAYENGLMPYT
NYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLEL
LLPNVPSQVNGLHLPARR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtacacaattatgtccagc
gaggaggcagcaaatgggaagaagtcatactgggctgagctggaaatcagtggtcgagta
aggagtcttagcacggccctgtggtctctcacccacctcactgcccttcacctcagtgac
aactcactgtcacgcatccctccagacattgccaaactacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaattgcttttaaataacaaccagttgcgagttctcccatttgaattgggaaaactgttt
cagttacagacactggggttgaaaggaaacccacttgcacaagaaatcatgagcctctac
caggaacctgatggtacacggagactgctcagctacttgttagacaatctggcaggggct
atcaagcgcataccaacagagcagccaccagctcggtcatggatctcactccaggaacct
gatcgaacacgtccatctactctcttctcggtcatgtgctacaacgtgctgtgtgataag
tacgccacacgacagctatacggctactgcccgtcctgggcactaaactgggaatacagg
aagaaatctatcatgcaggaaatcctcggctgcaatgcagacatcatcagtttgcaggag
gtggaaacggagcagtactacaatttcttcttgcctgagttgaaagagcaaggatacgat
gggttcttcagtccaaagtcacgagctagaaccatgtcagagtcagatcgtaaacatgtg
gacggatgtgcaattttcttcaagacagaaaagttcagcgccgtgcagaagcacacagtg
gagttcaaccagctggccatggctaactccgagggctctgaagccatgttgaacagggtg
atgacgaaggacaacattggagtagcggtactgcttgaggtccgcaaagagcttatcgaa
atctcctctggtaagtcgctgcatggcatggacaagcagcttctgctggtagcaaacgcc
cacatgcactgggacccggagtactcggargtcaaactagtccayaccatgatgttcctg
tcggaggtgaagaacatagtggaccttgccgcacgcagcttcaagctgtccacctctggc
gagaccaatgcaattccactggtgctgtgtgctgacctcaactccttgcctgactccggt
gtggtggagtacctgagctctggcggtgtggactgcacccacaaggacttcaaggagctc
cgctacagcgacagcctgaccaaattcaactgcaacggcaagaacagcctgtccaacggc
aggatcacccacggcttcaagctgaagagcgcctacgagaacggcctgatgccttacacc
aactacacctttgacttcaagggtgtgatcgactacattttctactccaagcctcacctg
aacgtgctgggtatcctgggccccctggacccccactggcttgtagagaacaatgtcagc
ggctgcccacatccccacattccctctgaccacttctccctgtttgctcagctggaattg
ctcctgcccaatgtgccctcacaggtcaatgggcttcacctgcctgcacgcaggtag
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