Austrofundulus limnaeus (annual killifish): 106517595
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Entry
106517595 CDS
T06063
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106517595
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106517595
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106517595
NCBI-ProteinID:
XP_013863974
UniProt:
A0A2I4B8A3
LinkDB
All DBs
Position
Unknown
AA seq
639 aa
AA seq
DB search
METCSGSKPACQCARPAAVQRGLPGSLITALCLLLSLSSITVCLLMSFRTSELEKRLQAE
VTTVLQPARRTLQNQDGTLVSELSAPIGQLVEEKMVSLMPKLRTTREVGQECSCPPGPPG
KRGRIGRRGEPGPPGKAGRDGYPGPLGLDGKPGLPGLKGSQGLPGLKGEKGDQGDIGPRG
PPNYSTYAGLHSNQIVAVKMVFPRYDHSFLSGEQYSSFQRHFLKGDQGQAGPVGPPGPPG
PPGPRGPPGNTGKDGPRGPAGEPGLPGRDGVDGPQGLPGKPGEDGEPGYPGVQGPPGSKG
EPGVGQKGERGMDGLPGLKGDKGEMGVQGPEGPMGHPGEKGAAGSSDVIDFNGKLLDAFQ
AISIISVSGPPGPPGPPGFPGEKGELGLPGPAGVDGEKGPKGDAGEPGHPGERGEKGEMG
LSGPAGVDGQKGEKGDCRLDDNLIQMISQPGPPGPPGPPGVPGSPGSTGLHGMPGPKGEP
GVGMKGDKGDAGSPGLTGLDGHQGPPGPAGLVGLPGAKGEKGRPGEPGLDGFPGLQGDKG
DRGERGEKGDRGSVGKKGLKGQKGEQGPPGLDQPCPVGCDETKGLSVKTAPSSPETPPLP
PSGPEAPCPVGHDGLPIPGCWHKEEMARQKLKRKRLSQP
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggagacatgtagcggctccaaaccggcgtgtcagtgcgccaggcccgcggcggtccag
cggggtctgccggggtccctcatcacggctctgtgcctgctcctgtccctgagctccatc
accgtctgcctgctgatgagcttcaggacctccgagctggagaagcggctgcaggcggag
gtcacgaccgtcctccaaccagcgcgcaggactctccagaaccaggacgggacgctmgtt
tccgagctgagcgccccgatagggcagctggtggaagagaaaatggtgtctctgatgcca
aagctgagaaccaccagagaagttggccaagagtgctcctgccctccagggcctccagga
aaacgtggacggattggaagacgaggggaacccgggcctcctggcaaagctggacgggat
ggatacccgggtccgcttggcttggatggcaaaccgggtttgccaggtctaaaaggaagt
cagggactgcccggactcaagggagagaagggtgaccaaggagacatcgggccaaggggt
cctcctaactacagcacatacgcaggtctgcacagtaatcagattgtcgctgtcaagatg
gttttcccacggtacgaccacagctttctctctggagagcagtacagcagctttcagaga
cactttctgaagggcgatcagggtcaagcgggacctgttggtcctcccggtcctccaggt
ccaccagggccccgcggaccccccgggaacaccggcaaggatgggcctcgtggtcctgct
ggagagccgggtttgcccggccgcgatggtgttgatggaccacagggactgcctggaaag
ccgggagaagatggcgagcccggctatccaggagtgcagggtcctccaggttcaaagggg
gagccaggggtaggtcagaaaggagaacggggcatggatggactcccaggtttaaagggt
gataaaggagaaatgggagtgcaaggacctgagggacctatgggtcatcccggtgaaaag
ggggccgcgggctcctcagacgtcatcgatttcaacggcaagctcctcgatgctttccag
gccatcagcatcatcagcgtttcgggaccacctggaccaccaggccctcctggctttcca
ggagaaaagggtgagctcgggttacctggaccagcaggtgtggacggagaaaagggaccc
aaaggtgatgccggtgaaccagggcatcctggtgaaagaggagagaagggagagatgggt
ctgtctgggcctgctggtgtggacggacagaaaggggaaaaaggtgactgcaggctggac
gacaacctgattcagatgatttctcagccggggcctccgggcccacctgggcctcctggc
gtacccggttctccaggatccacgggtctgcatgggatgcctggtcctaagggtgaacca
ggtgttgggatgaagggagacaaaggggatgctggttctcctggactcacaggactagac
ggccaccagggtccacctgggcctgctgggttggtgggacttccaggtgcaaagggagaa
aaaggaagaccaggagagcccggactcgacggtttcccgggtctgcagggagacaaagga
gaccgaggggaaagaggagaaaagggtgacagggggtcggtagggaagaaaggtctgaag
ggacaaaaaggagaacaaggtcctcccggactggaccagccgtgtcctgtgggctgtgat
gagactaaaggtctctctgtgaagacagcgccttcttcgcctgaaactcctcctcttcct
ccttcaggccccgaggccccctgtcctgtgggacacgatggcctaccaataccaggctgt
tggcacaaggaggaaatggcgaggcagaagctgaagcgcaagcgtctctctcagccctga
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