Austrofundulus limnaeus (annual killifish): 106517655
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Entry
106517655 CDS
T06063
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106517655 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106517655 (smarcd1)
03036 Chromosome and associated proteins [BR:
alim03036
]
106517655 (smarcd1)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106517655 (smarcd1)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106517655 (smarcd1)
PBAF complex
106517655 (smarcd1)
GBAF(ncBAF) complex
106517655 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
106517655
NCBI-ProteinID:
XP_013864080
UniProt:
A0A2I4B8N3
LinkDB
All DBs
Position
Unknown
AA seq
527 aa
AA seq
DB search
MARRRHSEEMASRGGFQATPTGGGGGAMGPGPPVPGAGPGIGPGTPSGRMGPSSATQNHM
YRSPMPGPGYPRPGMPPSSRMTPQGPAMGPPGYGSSPVSRPGMPGVMDPSRKRPAPQQIQ
QVQQQQNRNQHFYSTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDI
QEALKRPIKQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATK
QKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLML
DYQPPQFKLDPRLARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFE
TQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFL
LSTASQQEIAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTD
VVGNLEEERRAEFYYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcggcgacattcagaggagatggcgtccagaggggggtttcaggcaacaccg
acgggtggtggcggtggagcaatgggacctggaccgccggtacccggtgcaggaccgggt
attgggcctggaacaccctctggaagaatgggaccgtcgtcggccacgcagaaccacatg
taccgctctccgatgcccgggcctggatacccgagaccaggcatgcctccatccagccgt
atgacccctcagggaccagccatgggccctccggggtacggcagcagccctgtgtctcgc
cccggaatgcctggggtgatggacccttctcgaaaaaggcccgcccctcaacagatccag
caggttcagcagcagcagaaccgcaaccagcatttttacagcacaaagaagaagaagatg
gctgataaaattctacctcagaggatcagggaactggtcccagagtctcaggcttacatg
gatctcctggcttttgagaggaagttggaccagactattatgcgtaagaggcttgatatt
caggaggcccttaagaggcccattaagcaaaaaagaaagcttcggatttttatatccaac
actttcaaccctgcaaagcctgatgctgaggatggagagggcacagttgcatcatgggag
ctacgtgttgaagggcgtcttctggaagatacagctgtgtccaagtatgaagccaccaaa
caaaaacgaaagttctcatcattcttcaagtctcttgtgattgaattggacaaagacctg
tatgggccagataatcacctggttgaatggcacaggaccgccaccacccaggagactgat
ggtttccaggtaaagaggcccggtgatgtgggagttcgctgcaccgtcctgctcatgctt
gactaccagccccctcagtttaagctggacccccgtctggcccgtatgttgggtatccac
actcagaccagaccagtcatcattcaggccctgtggcagtacgtcaagacacacaaactc
caagacccacatgagcgcgagtttattaactgtgacaagtacctgcagcagatttttgag
actcagcggatgaagttttctgaaatcccacagcgcttgcatgctctgctgatgcctcca
gaacccatcatcataaaccatgtgatcagtgtggaccccaatgatcaaaagaagaccgct
tgctatgatattgatgtggaggtggacgacacgctgaagacccagatgaactccttcctg
ctgtccacagccagccagcaggaaatagcaggactggataacaagatccatgaaaccatt
gagacgatcaaccaactgaaaacccaaagggagttcatgttgagtttcgccagagatcct
cagggatttatcaacgactggcttcagtcccagtgcagagacctcaagactatgactgat
gtggtgggaaacctagaagaggagcgaagagcagagttttactaccaaccctgggctcag
gaggccgtctgtcgctacttctactccaaagtccagcagaggcgacaggaactggagcag
gcgctcggcatcaggaacacttga
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