Austrofundulus limnaeus (annual killifish): 106518157
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Entry
106518157 CDS
T06063
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106518157 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
106518157 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106518157 (pabpc1)
03041 Spliceosome [BR:
alim03041
]
106518157 (pabpc1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106518157 (pabpc1)
mRNA cycle factors
Stress granule specific factors
106518157 (pabpc1)
Spliceosome [BR:
alim03041
]
Complex C
Other components
Complex C specific factors
106518157 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
YflT
HTH_58
Motif
Other DBs
NCBI-GeneID:
106518157
NCBI-ProteinID:
XP_013864743
UniProt:
A0A2I4BAK0
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All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDITEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
VELGARAKEFTNVYIKNFGDDMDDEKLNEIFNKYGNALSIRVMTDENGKSRGFGFVSFEK
HEDAQKAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQLKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFAPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRP
AYYPAAGQMAQLRPSPRWATQGVRPQHFQNMTGSMRPSAPRPQTFSTIRPASQVPRMMST
QRVASQAPRPATAAAAAAAPVRGVPQYKYAAGVRNTQPHISAQPVSLQQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVDEAVAVLQAHQAKEAAQKTVTNSAAVPSV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgctcccagttaccccatggcttccctgtacgtcggggacctgcattcg
gacatcaccgaggccatgctgtacgagaaattcagcccagccggagccatcctctcgatc
cgggtctgtagggacatgatcacccggcggtcccttggatacgcctatgtcaacttccaa
cagccagcggacgctgagcgggctctggacaccatgaacttcgatgtgatcaaagggcgt
cccgtacgcatcatgtggtcgcagcgtgatccgtcattgaggaaaagcggcgtggggaat
attttcatcaagaatcttgacaagtccatcgacaacaaggctctttatgacaccttctct
gcttttggcaacatcttgtcgtgcaaggtggtttgtgatgaaaatggctctaaaggctac
ggctttgtgcattttgagactcaggaggctgctgaacgagccattgaaaaaatgaacggc
atgctgctcaatgacagaaaagtgtttgtgggtcgctttaaatctcgcaaagagcgtgag
gttgagctgggagcccgggccaaagagttcacaaacgtctacatcaaaaacttcggcgac
gacatggatgacgagaagctgaatgagatctttaataagtacggaaaygctctgagtatt
cgggttatgacggacgaaaacggaaagtccagagggttcggcttcgtcagctttgaaaaa
cacgaggacgcccaaaaagcagtggatgaaatgaatggaaaggagatgaatggaaagctc
atctacgttggccgagcccagaagaaggtggagcgtcagacggagctgaagcgcaagttt
gaacaactgaaacaagaccgcatgactcgttaccagggtgtcaacttgtatgtgaagaac
cttgatgacgggattgatgacgaacgcctgagaaaggagtttgcgccgtttggttccata
actagtgccaaggtgatgatggaaggtgggcgcagcaaaggcttcggctttgtctgcttc
tcgtccccagaggaggccacaaaagcggtcacagaaatgaacggacgcattgtggccacc
aagccgctctacgtggccctggcccagagaaaagaggagcgccaagctcacctgaccaac
cagtacatgcagcgcatggccagtgtgcgcgcagtgccaaatcctgtcatcaacccctac
cagcccgcgccaccctctggctacttcatggcagccatacctcaggctcagaaccgtcct
gcttactacccagctgctggccagatggctcagctgcgcccgagcccacgttgggctacc
caaggtgtccgaccccagcactttcagaacatgactggttccatgcgtccgtcagcacct
cgccctcagaccttcagtaccatacggcctgcctcccaggtcccccgcatgatgtccacc
cagcgcgttgcctctcaggctccccgaccagccactgcagctgctgcagcagcggctcca
gtacgtggagtacctcagtataagtatgcagcaggagtccgcaacacccagccgcacatc
agtgctcagccagtctccctgcagcagcctgcagtccacgttcagggacaggaacctctg
actgcctccatgctggccgctgctccgccacaggaacagaagcagatgctgggtgagcgc
ctatttccgctgatccagaacatgcatcccagcctggcaggcaagatcaccggcatgctg
ctggagattgacaactctgagctgctccacatgctggagtccccagagtctcttcgctca
aaggtggacgaggcggtggcagtgctgcaggcccaccaggctaaagaggccgcccagaaa
actgtgacaaactctgctgctgtcccaagtgtctga
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