Austrofundulus limnaeus (annual killifish): 106518265
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Entry
106518265 CDS
T06063
Symbol
pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
alim04121
]
106518265 (pdzrn3)
Enzymes [BR:
alim01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106518265 (pdzrn3)
Ubiquitin system [BR:
alim04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
106518265 (pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
zf-RING_5
Prok-RING_4
zf-TRAF
PDZ_Tricorn
zf-rbx1
U-box
zf-RING_6
RING_XB3-XBAT31
IBR_1
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
106518265
NCBI-ProteinID:
XP_013864934
UniProt:
A0A2I4BAZ8
LinkDB
All DBs
Position
Unknown
AA seq
1065 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEVCAFGPAKCRNKGCDAVL
SLRDVDAHMRDACEHRAAGLCEGGCGLTLTHREQKLKSHCCVRALKAHNGALQCKLLILD
RELKKQAIEANKREKSLLAQLSSVHGELQMTALKYQKKFTEYSERIDSLTQTVTSSCQED
QTKXVTVVLLREGGSLGFNIVGGRPCADDNDSTSNEGIFVSKIVEKGPADKEGGLQIHDR
IIEVRESSFAPKKSFLMCRVNGKDLSKATHEQAVEAFRTAKEPIMVQVLRRAPYPKLVSP
AADIQVSDMGTQTDITLQHITALSNMPASSPPMTELEEYLLPDEHPPGHAFFDPNDFLEG
MQQDIEREGLEYEEVDLYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIR
EGDKIVQINGVEIQNREDAVALLTTEGNQNISLLVARPEIQLDDSWMDDDRNDFLDDLHM
DMLEQQHHQAMQFTASMLEQKKXEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSE
HENLADDQTTTASNTLGSCRKLAYSQDTLGSTDLPFSGECFVSADYTDADFLGIPADECE
RFRELLELKCQMRSSGAQGPYGQGAGAGGQAEEGVDKELELLNEELRSIELECLNIVRAH
KMQQLREQCRESWMLHNSGFRNYNTSIDARRHELSDISELPEKSDKDSSSAYNTGESCRS
TPLTLELSPDNSLRRGAEBQGTAGPSGSSSSVGKMLKPLLSPVQEACGPSRSRGSSKDPD
GALQAENKERKLGDSSKTGRSFSHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMS
LVSMCRDPISLSDLEPKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDD
DAISELKMGRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQSSTEDKKEPNIIELS
HKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggaccgcttcaagggcaccgtggacccggacttcaaatgcaacttg
tgcaacaaagtcctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaagtgccagcgcatctcc
gccaaggagctgaaccacgtcctgccgctgaagaacctcatcctgaagctggagatcaaa
tgcgacaaccacgcgcggggctgcgacgcggtggtgaagctgcagcacctggccgagcac
gccgaggtgtgcgccttcggcccggccaagtgcaggaacaaaggatgcgacgcggtgctc
agcctgcgggacgtggacgctcacatgcgggacgcgtgcgagcaccgggcggccgggctc
tgcgagggcggctgcgggctgacgctcacgcaccgggagcagaagttaaagagccactgt
tgcgtgagagccctgaaggcgcacaacggcgcgctgcagtgcaaactcctcatcctggac
cgggagttgaagaagcaggcgatcgaagccaacaagagggagaagtckctcctggcccag
ctctcctccgtgcacggcgagctgcagatgacagcgctcaagtaccagaagaaattcacc
gaatacagcgagaggatcgactccctgacacagaccgtgacctcctcctgccaggaagac
cagactaaamatgtgacagttgtccttcttcgtgagggtggatctctgggttttaacatc
gtaggaggaaggccatgcgcggatgacaatgacagcacttcaaacgaagggatctttgta
tccaagattgttgagaaaggtccagcggacaaggagggaggccttcaaattcacgacaga
ataattgaggtaagagaatcatcctttgcccccaaaaaatcctttctgatgtgccgtgtc
aatggtaaggatctctccaaggccacccacgaacaggcagtggaggcgttccgcaccgcc
aaggagcccatcatggttcaggttctgcgccgggccccttaccccaaactggtcagtcct
gctgcagacatccaggtgtcagacatgggcacgcagacagacatcaccctgcagcacatc
acggctcttagcaatatgcctgcgtcctcaccgccaatgacagagctggaagagtatctg
ctgccggacgagcatcctcctgggcatgcattctttgaccccaacgatttcctagaggga
atgcaacaggacatagagcgtgaggggctggaatatgaggaggtggatctgtaccgggcc
aacatccaagataaacttggcctgaccatctgttatagaactgatgatgaagatgaggct
gggatttacatcagtgagatcgacccaaacagcatcgctgcaaaggacggcagaattagg
gaaggggacaaaattgtacagataaatggtgttgagatccaaaaccgtgaggatgctgtg
gcactgttgaccactgagggcaaccagaatatctctttgctggtggccaggccagagatc
cagctggacgacagctggatggatgatgacaggaatgacttcctggatgacctccacatg
gacatgctggagcagcagcaccatcaggccatgcagttcactgccagcatgctggagcag
aagaagcrtgaggaggatggaggcaccacagacacagccacactgctctccaaccaccac
gagaaggacagcggagtcggccgcaccgatgagagcactcgaaacgacgagagctcggag
cacgagaacctggccgacgatcagaccaccacagcctccaacaccctgggcagctgcagg
aagctggcctacagccaggacaccctcggcagcaccgacctgcccttcagcggcgagtgc
ttcgtctcggcggactacaccgacgccgactttctgggcatcccagccgacgaatgtgaa
cgtttccgagaactgctggagctcaagtgtcagatgaggagcagtggagctcagggcccg
tacggtcagggcgccggggcggggggtcaggccgaggagggtgtggacaaggagctggag
ctgctgaacgaggagctgcgcagcattgagctggagtgcctgaacattgtccgcgctcac
aaaatgcagcagctgagggagcagtgccgggagtcgtggatgctccacaacagcggcttc
cgcaactacaacaccagcatagacgcccggcgccacgagctgtccgacatctcggagctg
ccggagaaatcggataaggacagctccagcgcctacaacactggggagagctgccgcagc
acgcctctcactctggagctgtctccggataactccctccgtcgaggagcagagraccag
ggcacagctggaccgtctggctccagcagctccgttggcaaaatgctcaagcccctctta
tcccccgtccaggaggcctgtggccccagcaggagcagaggctcgtccaaggacccagat
ggagcgctgcaggctgaaaacaaagaaagaaagctcggagactccagtaagaccggccgc
agcttctcccactccccctacaaacacgctcacatccccgcccacgcccagcactaccag
agctacatgcatctgatccagcagaagtcagccgtggagtacgcccagagccagatgagc
ctggtcagcatgtgccgggaccccatcagcctcagcgacctmgagcccaagatggagtgg
aaagtgaagatccgcagcgacggcaccaggtacatcacaaagcggcccgtccgggacaag
ctgctgagggagcgcgccctgcggattcacgaggagcgcagcggcatgaccacggacgac
gacgccatcagcgagctgaagatgggccgctactggagcaaggaggagaggaagcagcac
gcggtgcgagccaaggagcagaagcagcgccgcgagttcatgaagcagagccgggccgac
tgtctgaaggagcagagcagtacggaggacaaaaaggagccgaacatcatcgaactcagc
cacaaaaaaatgatgaaaaagaggaacaagaaaatatttgacaactggatgaccatccag
gaactgctgacccatggtaccaagtcacctgacggcacragggtttacaactctctgctg
tctgtgaccacagtctga
DBGET
integrated database retrieval system
