Austrofundulus limnaeus (annual killifish): 106518769
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Entry
106518769 CDS
T06063
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106518769 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106518769 (ddx5)
03009 Ribosome biogenesis [BR:
alim03009
]
106518769 (ddx5)
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106518769 (ddx5)
Spliceosome [BR:
alim03041
]
Complex A
U1 snRNP components
U1 related factors
106518769 (ddx5)
Complex B
106518769 (ddx5)
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
Pre-60S particles
Helicases
106518769 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
106518769
NCBI-ProteinID:
XP_013865624
UniProt:
A0A2I4BD10
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPSRFGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKFQKNFY
QEHPDVTHRPLQEVEQYRRSKEVTVKGRDCPKPILRFNEAAFPSYVMDVIVKQNWTEPTP
IQAQGWPVALSGKDLVGIAQTGSGKTLAYLLPAVVHIQHQPFLEHGDGPICLVLAPTREL
AQQVQQVAVEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLECGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNLKQAGDLISVLREANQAINPKLIQMAEDRG
GRGRGGRGGYKDDRRDRYSGGGRSNFGGSGYRDRDSDRGFGGGPKTAFGGSKAQNSNIYG
GNGGNSSGSFGNNNYNSSNGQGNFSGPPNQGGFGNQGFQAPPQFGGMQRAAQNGVNHSPF
PFNSQPPPPQNQQPPPPPPMVPYPMPPPFPQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagaccgtgggagagatagagggtatggaggcggcccttct
cgttttggtgggggcaacaggggaggacctcctccaggaaagtttggcaatcctggtgaa
aggctgcgaaagaggcactggaaccttgatgagcttccaaagtttcaaaagaacttctac
caggaacacccagatgtcacacacagacctctgcaagaggttgagcagtatcgcagaagc
aaggaggttacagtcaaaggcagagattgcccaaaaccaatactaagattcaacgaagct
gcattcccaagctacgttatggacgtcattgtgaaacagaactggaccgaaccaactcca
atccaggctcaagggtggcccgtcgccctgagtggaaaagacttggttggcatcgctcag
actgggtctggaaaaaccctggcatacctgctgcctgcagtcgttcatatccaacatcag
cctttcttggagcatggagacgggcccatttgcttggtgctggcaccaacacgcgagttg
gctcagcaggtgcaacaagtggctgttgaatacggccgggcctctcgtctcaagagcact
tgcatctatggtggcgcacccaaaggaccgcaactcagggaccttgaacgaggtgttgag
atctgcatcgctaccccgggtcgkcttattgattttctggagtgtggtaaaacaaacttg
cgtcgttgcacctatctggtgctggacgaagctgaccgcatgctggacatgggttttgaa
cctcagatccgcaagatagtggatcaaatacggccagaccgtcagactctgatgtggagc
gccacttggcctaaagaagttcgtcagctggctgaggacttcctgaaggactacgttcag
atcaacattggagccctgcagctgagcgccaatcacaacatcctgcagatagttgatgtg
tgcaatgacttggagaaggaggataaactgattcgtttactggaggagataatgagtgag
aaggagaataagaccattatttttgtggagaccaaaaggcgttgtgatgagctcactagg
aggatgagaagagatgggtggcctgcaatgggaatccatggagacaagagccagcaagag
agggactgggttcttaacgagttcagatatggcaaagctccaattctcattgctacagat
gtggcctcccgtggtctagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctccgaggattatatccaccgcattggacgcacagcccgaagtcaaaaaacgggc
acagcctacactttcttcacccccaacaacttgaaacaagcaggcgacctgatctctgtg
ctccgcgaggccaaccaggccatcaaccccaagctgatccagatggcagaggacagagga
ggtcgtggtcgagggggaagaggtggctacaaggacgaccgtcgcgataggtattctggg
ggtgggagaagtaattttggtggtagcggctatagagacagggacagtgatagaggtttt
ggtggagggccgaagactgcctttggtggcagcaaggcccagaacagcaacatttatggg
ggaaatggcggcaactctagtggtagctttggcaataacaattacaacagcagcaacgga
cagggtaatttcagtggtccaccaaaccagggtggctttgggaaccaaggtttccaagcc
ccacctcagtttggtggcatgcagagggctgctcagaacggcgtgaatcactcgccgttc
ccattcaactctcagcccccgccaccacagaaccaacagccaccacccccaccgccgatg
gtgccctatcccatgcctccacctttcccacagtag
DBGET
integrated database retrieval system
