Austrofundulus limnaeus (annual killifish): 106519237
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Entry
106519237 CDS
T06063
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106519237 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
106519237 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106519237 (lsm4)
03041 Spliceosome [BR:
alim03041
]
106519237 (lsm4)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106519237 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
106519237 (lsm4)
Spliceosome [BR:
alim03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106519237 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
106519237
NCBI-ProteinID:
XP_013866264
UniProt:
A0A2I4BEU3
LinkDB
All DBs
Position
Unknown
AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCENWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVASKGRGRGGSQQNKQQGKGRGGPGRGLFGGRGRGMSG
PGRGQQQQQQQQSDKKAGKPQGMKNQH
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctgtcactgttgaagactgcccagaatcatcctatgctggtggagctgaag
aatggagagacctacaacggccacctggtcagctgtgaraactggatgaacatcaaccta
agagaggtcatctgcacatccagggacggagataaattctggaggatgcctgagtgctac
atccgagggagcaccatcaagtatttgcggatccccgatgagatcatcgacatggtgaag
gaggaggtggcgtcaaagggccgcggccgcggtggttcccagcagaacaaacagcagggc
aaaggaagaggaggacctggaagaggtctgtttggcggccgtggcagagggatgtctggt
cctggtcggggacagcagcagcagcagcagcagcagtcggataagaaagcaggcaaacca
cagggaatgaagaaccagcactga
DBGET
integrated database retrieval system
