Austrofundulus limnaeus (annual killifish): 106519348
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Entry
106519348 CDS
T06063
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106519348 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
106519348 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106519348 (pabpc4)
03041 Spliceosome [BR:
alim03041
]
106519348 (pabpc4)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106519348 (pabpc4)
mRNA cycle factors
Stress granule specific factors
106519348 (pabpc4)
Spliceosome [BR:
alim03041
]
Complex C
Other components
Complex C specific factors
106519348 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_10
RRM_7
RRM_5
RBD_RDR6
RRM_3
OB_RNB
POP1_C
DUF6262
ApbA_C
Motif
Other DBs
NCBI-GeneID:
106519348
NCBI-ProteinID:
XP_013866440
UniProt:
A0A2I4BFD2
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MNTAAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFEKHGKTLSVKVMIDSTGKSRGFGFVSFEK
HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQIRPNPRWQQQGGRGQGGFQGMPGSQLRQPGPRGNLRHMSPGGQGPRATGQA
MAPRPSMGVSGPRSMPPYKYATSVRNPNPQVVQTIPLQQAQPAVHVQGQEPLTASMLAAA
PPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAV
LQAHQAKKDATQKTGSMTTTAAATS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggcagcgggcagttaccccatggcttctctgtatgtgggcgacctgcacccc
gacatcaccgaggcgatgctgtacgagaagttcagccccgccggcccggtgctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggatatgcttacgtcaacttctcc
cagcccgccgacgccgagagagccctggacaccatgaactttgatgtggtgaaagggaag
ccgatcagaatcatgtggtcacagagagatccctcgctcaggaagtcaggcgtgggcaac
gtgtttatcaagaacctggacaaatccatcgacaacaaagctctgtacgacaccttctct
gcctttggcaacatcctctcctgcaaggtggtgtgcgatgagaacggctctaagggctac
gccttcgttcatttcgagacccaggacgcggccgatcgagccatagagaagatgaacggc
atgcttctgaatgaccgcaaggtgtttgtgggtcgcttcaaatcccgcaaagaacgggag
gccgagctcggcgccaaagccaaagagtttacaaacgtctacatcaagaactttggggac
gacatggacgacgagcggctgaaagagctttttgagaaacacggtaaaacactcagcgtg
aaggtgatgatagactccaccggcaaatccagagggtttggatttgttagctttgagaaa
cacgaagacgctaacaaggctgtggaggaaatgaacggcaccgagctcaacgggaagacc
gtgttcgtggggagagctcagaagaaaatggagcggcaggcggagctgaagaggaaattt
gagcagctgaagcaagaacgaatcagtcggtatcagggagttaatctttacatcaagaac
ctggatgacaccatcgatgatgagaagttgcgtaaagagttttctccgtttggatcaatt
actagtgctaaagtgatgctagaagaaggtcgatccaagggcttcggtttcgtctgcttc
tcttcccccgaggaggccaccaaggccgtgactgagatgaacgggcgcatcgttggcacc
aagcccctgtacgtggctctggctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgaatcgctggcatgagggccatgcccgccaacgccatcatcaaccag
ttccagcccaccagtggctacttcatgccagctgtgcctcaggcccaaaataggacgaca
tactacgcacccaatcagctggcccaaatacgacccaaccccaggtggcagcaacaaggt
ggccgaggtcaaggtggtttccaaggaatgcccggctcccagctgcgtcagcctggacct
cgtggcaacctgagacacatgagtcctggtggacaaggccctcgagctacaggccaagcc
atggctcctcgaccatccatgggagtctctggtcctcggtccatgcctccttacaaatac
gccactagtgtccgaaaccccaatcctcaagtggtgcaaacgattcccttacagcaggct
cagccagctgttcatgttcagggtcaggagcccctcacggcctccatgttggctgctgcg
cccccacaggagcagaaacagatgttaggagagcgtctgttcccgctgattcaggccatg
cacgccaacctggcagggaagatcaccggcatgctgctggagatcgacaactcggagctg
ctgcacatgctggagtcgcacgaatccctccgttcaaaggtggaggaagctgtcgctgtt
ctgcaggcccaccaggcaaagaaagatgccactcagaaaactggcagcatgacaactact
gctgctgcaacatcctga
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