Austrofundulus limnaeus (annual killifish): 106519380
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Entry
106519380 CDS
T06063
Name
(RefSeq) protocadherin alpha-C2-like
KO
K16493
protocadherin alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
106519380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alim03036
]
106519380
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alim04515
]
106519380
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
106519380
Cell adhesion molecules [BR:
alim04515
]
Cadherins
Protocadherins
106519380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Cadherin_FAT4_N
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
106519380
NCBI-ProteinID:
XP_013866471
UniProt:
A0A2I4BFF1
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MAVTGMICNRTGRSIDVPFYFVLFSLFCGLACGQLRYSITEELENGALVGDLAHDLGLDI
RKLASRRIKVTPSSSAKRYVIVNPKNGKLLVNDRIDREALCDLSSTCLINLEVLVENPTE
LHQVEVEIVDANDNAPQFPRDEYQLEIIESAMPGSRYSIENAQDPDVGSNSVRMYQLSTN
ENFALVSNKPSLNTKHIELVLKKPLDREQTPYHQLILSAVDGGIPEKTGTAKINIRVLDS
NDNVPLFDSSVYKVKLLENSRKDTLVIKLNATDLDEGTNAEVYYSFSSYTPERVRQMFSM
DTNTGEIRVRNNVDYEETNSYEMYIQAMDKGPGAVAAHCKVVVEVVDVNDNVPQIVLSSL
SSPVREDARADTVVALISVTDQDSGANKQVSLEIPAGLPFKIKSFRNYYTLVTSAFLDRE
TTDAYNVTLSATDGGNPPLSSQKTIQVDVADVNDNPPRFEQTSYTVYVTENNAPGASLCT
VKAQDADIKENARITYTVLNDNNHGIPVTSYVSVKADTGEAYALRAFDYESLREFHFQVK
AQDGGIPPLSRVATVYIYIMDQNDHAPLIVSPAGNGTRSLETVQKNADPGALVTKVVAYD
ADAGPNAWMVYVLETATDLDLFKVHEHTGEIRTTRRILEDNSTSFALTVVVKDHGQPALS
STATINVAVMEIPPKVAPDTKKVSRPHNTLFFSNVTLYLIVALSATTFVFLVTVVVLAIV
RCHAYCSQPGSCCGSQKPPPDGGSSSVSAGGGGGGGATGQPNNNVVLRRDLKVEPHYIEV
RGNGSLTKTYCYKTCLTATSGSDTFMFYNTGRPISGTWGSGADRFFTSGSGFVRRLSMPD
ASLQICPEPKAPNADWRYSASLRAGVQGAVHMEESSVVQGAQGMLVQNWPTVSSAAGEWK
CCSGQGVACIKINQDNHVCXKDYRL
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggctgtaacggggatgatatgcaaccggacggggagaagtattgatgtgcctttttat
tttgtgctgttttccttattttgtggccttgcgtgtggacagttgcggtattcgattaca
gaggagctggaaaatggggcactggtcggggatctggcgcacgacctggggctggatatt
cgaaagctcgccagccggagaatcaaggtaaccccatccagcagcgccaagcgctacgtg
attgtcaaccccaaaaatgggaaactacttgtcaacgacagaatcgacagggaggcgctg
tgtgatctctccagcacttgccttataaacctggaggtgctggtggaaaaccccacagag
ctgcaccaggtcgaggtggagattgtggacgccaatgacaatgcgccgcagttccccaga
gacgagtaccaactggagatcatagaatccgccatgccggggtcccgttactcaattgaa
aacgctcaagacccggacgtcgggtccaactctgtccgcatgtatcagcttagcacaaac
gagaattttgcgctcgtctccaacaaaccctccctaaacacaaagcacatcgagctcgtg
ctcaaaaagcccctggatcgtgagcagacgccttaccaccagttaattctaagtgctgtg
gatggtgggataccagagaagacaggcacggccaaaattaacatcagggtgctggactcc
aatgacaatgtccctctgtttgacagctcggtgtataaggtgaagctgttggaaaactcg
cgtaaagacaccctggtgattaaactgaacgctacagacctggatgagggcacaaacgca
gaggtttattattcttttagcagctacaccccagagagagtcagacagatgtttagcatg
gacactaatacgggagagataagagtgaggaacaatgttgactatgaagaaaccaactcc
tacgagatgtacatccaggctatggataagggccccggggccgtggcagcccactgcaaa
gtggtggttgaggttgtggatgtgaatgacaatgtccctcagattgttctgtcatctctg
tcaagccccgtgagggaggacgcccgtgcagacacagttgtggccctcattagtgtcacc
gatcaagactctggcgccaacaagcaggtgagcttagagatcccagcaggccttccgttc
aagatcaagtcattcagaaattattacactctggttacctcagccttcctggaccgtgag
accactgatgcctacaatgtcacgctgagtgccacagatggagggaaccctcccttatct
tcccagaaaaccatacaggtggacgtggctgacgttaatgacaacccgccacgctttgag
cagacttcatatacagtgtatgtgactgaaaacaatgcccctggggcctctttgtgtact
gtgaaagctcaagatgcagacattaaggagaatgctcgcatcacctatacagtgctcaat
gacaacaaccacggcatccctgtcacctcatatgtgtctgtgaaggccgatacaggcgag
gcttacgccctgcgagcctttgactatgagtcactgagagagtttcatttccaggtcaaa
gcccaggatgggggcattcctcctctcagccgagtcgccacagtctacatctacatcatg
gatcagaatgaccacgctccactgatagtcagccctgctggcaatgggacccgctcactg
gagacagtccaaaagaacgctgaccctggtgccttggtgacgaaagtggtggcgtatgat
gcagatgcaggtccaaacgcctggatggtctacgtgctggagacagccacagacctggac
ttgttcaaagtgcatgagcacactggagagatccggaccactcgcaggatcctggaggac
aattccacctcctttgctctaactgttgttgtaaaggaccatggccagccagccctctcc
tccactgccaccatcaatgtagctgtcatggaaataccacccaaagtggcccctgatacc
aagaaggtctcacggccccacaacacactgtttttctccaacgtcaccttatatttgatt
gtggccttgagcgctacaacgtttgttttcctggtcaccgtggtggtgctggctattgtc
cgctgccatgcctactgctcccagcctggctcctgctgcgggtcacagaaaccccctcca
gatggtgggagcagcagtgtgagtgctggtgggggaggcggcggaggggccacgggacag
cctaataacaatgtggtgcttcgaagagacctcaaagtggagcctcactacattgaagtg
cgagggaatggctccctgacgaagacgtactgctacaaaacctgcctgaccgccacctct
ggcagtgacaccttcatgttctataacacagggcggcccatcagtggcacctggggcagc
ggcgctgaccgcttcttcaccagtggaagtggatttgtgcgcagattgagcatgcccgac
gcttcactgcaaatctgcccagagccgaaagccccaaatgctgactggcgttattctgcg
tctttgagggcaggggtgcaaggtgcggtccacatggaagaatcctcagtggtgcaggga
gcccaggggatgctggtccagaactggcccactgtatccagtgctgcaggtgagtggaag
tgctgcagcggtcagggtgttgcgtgtatcaagataaatcaggataatcatgtgtgttmg
aaagattatcggctttaa
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