Austrofundulus limnaeus (annual killifish): 106519536
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Entry
106519536 CDS
T06063
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106519536 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106519536 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106519536 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106519536 (col1a2)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106519536 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
106519536
NCBI-ProteinID:
XP_013866709
UniProt:
A0A2I4BG36
LinkDB
All DBs
Position
Unknown
AA seq
1352 aa
AA seq
DB search
MLSFVDIRILLLLAVTSYLASCQLSGPRGDKGPRGDRGPQGPNGRDGKPGRPGLPGPPGP
PGLGGNYAAQYDGVKGPDPGPGPMGLMGPRGPPGPPGPPGPQGHTGHAGEPGEPGQAGSA
GPRGPPGPPGKAGDDGNNGRPGKPGDRGAVGPQGARGFPGTPGLPGMKGHRGYTGLDGRK
GEPGGAGPKGEPGASGASGSPGLAGQRGQPGERGRXGPAGSAGARGADGNVGPAGPAGPL
GSAGPPGFPGGPGPKGEIGPAGPTGPSGPQGARGEPGPNGAVGPVGPSGNPGANGLNGAK
GAAGAPGAAGGPGFPGPRGGPGPQGPQGATGPRGLSGDPGPQGIKGDTGPKGEPGNAGPQ
GVPGSQGEEGKRGPTGEIGANGPAGVRGARGAPGSRGLPGADGRTGPIGMPGARGSTGAA
GPRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPAGPAGQDGRSGPPGPTGPRGQP
GNIGFPGPKGPSGEPGKPGEKGSTGPTGLRGPPGPDGNNGATGPMGLAGGPGEKGEPGLA
GAPGFQGLPGPAGPAGEGGKPGERGIPGEQGASGPAGGKGERGNPGVAGATGAQGPMGPR
GPAGTAGPDGGKGEPGAAGAAGAAGHQGAAGMPGERGAAGTPGPKGEKGEAGHRGPDGNP
GRDGSRGLPGPPGPPGPTGANGDKGESGSFGPAGPAGPRGPPGERGEVGPAGGPGFAGPP
GSDGQPGARGERGPAGGKGEAGPSGPSGPAGQSGPAGPSGPAGPPGARGETGPAGATGLP
GAAGRVGAPGPAGIVGPPGFTGPAGKDGPRGLRGDPGPAGPSGEQGLVGPAGPAGEKGPS
GEPGPAGPPGAPGTSGPLGLQGFIGLPGARGDRGAPGGAGAVGEPGRVGPPGPAGARGPA
GNIGMPGMTGPQGEAGREGSPGNDGPPGRPGXPGFKGDRGEPGSAGSAGVGGAPGPAGPT
GAAGRPGNRGEPGPSGPTGPAGPAGARGAPGPAGPRGEKGVAGDRGDRGMKGLRGHPGLQ
GMPGPSGPPGDTGSAGAVGHAGPRGPAGPNGPPGKDGRAGGHGSMGSPGARGPPGYSGPV
GPAGPPGPPGPPGPSGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLTPEG
SRKNPARTCRDIKLSHPDWSSGFYWIDPNQGCINDAIKVFCDFTTRETCIYAHPESXAQK
NWYRSTETKKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKN
SIAYMDGESGNLKKAVVLQGSKDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIEYRTN
KPTRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatatccggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcaattatcggggcccagaggagacaaaggacctcgaggtgacaggggtcctcaa
ggcccaaatggaagagacggcaaacccggacgccctggccttcctggcccacctggtccc
cctggactcggcggaaactatgctgctcagtatgatggtgttaagggccccgatcccggc
cctggacccatgggtttgatgggacccagaggcccccctggacctcctggaccccctgga
cctcaaggacatacaggacacgctggtgagcctggagagcctggtcaggctggttctgct
ggacctcgtggcccccctggacctcccggcaaagctggagatgatggtaacaacggcagg
ccaggcaaacccggtgacagaggtgccgtcggcccccagggtgctcgcggattccccgga
accccaggacttccaggaatgaagggacacagaggttacactggtctggatggacgtaaa
ggagaacctggtggtgctggacccaaaggcgagcctggtgcatctggagcatctggaagt
cctggactggctggacagcgtggtcagcctggtgagagaggtcgtsccggccctgctggt
tctgctggtgctcgtggtgctgatggcaatgttggacctgctggacccgctggtcctctg
ggttctgccggtccccctggcttccctggtggtcccggccccaagggagaaattggaccc
gctggacctactggcccatctggacctcagggagcaagaggagagcctggacccaatggt
gctgttggcccagttggtccttctggtaaccctggtgctaacggcctgaacggagccaag
ggagctgctggagcccctggtgctgctggaggtcctggtttccccggaccaagaggagga
cctggacctcagggacctcagggcgccactggaccaagaggcctttctggagatcctggc
cctcagggtatcaagggagacactggtcccaagggagagcctggtaacgctggtcctcag
ggagtccctggaagtcagggtgaggagggaaagagaggacccactggtgagattggtgct
aatggycctgctggcgtccgtggagccagaggtgctcctggaagccgtggtctgcctggt
gctgacggacgtaccggtcccattggtatgcccggtgctcgtggctccactggtgccgcc
ggacctcgtggaccccctggagatgctggtcgtgctggtgagcctggcccagctggtctc
aggggtctcccaggtagccctggaagctctggacccccaggaaaagagggaccagctggt
cctgctggacaagatggccgctctggaccacctggccccaccggcccaagaggccagcct
ggaaacattggtttccctggacccaaaggaccctccggagagcctggtaagcctggagag
aagggatctactggccccactggactgagaggaccccctggacctgacggcaacaatgga
gctactggccccatgggacttgctggcggtcctggtgagaagggagagccgggtcttgca
ggagctcctggcttccagggtctgcctggacccgctggacctgctggtgagggtggcaaa
cccggagagagaggtatcccaggagagcagggagcttcrggacctgctggtggcaaggga
gagcgtggtaacccaggtgtcgctggagctactggagctcagggaccaatgggacctcgt
ggacccgctggaaccgctggacctgatggtggcaagggagagcctggtgctgctggagct
gctggagctgctggacatcagggagctgctggcatgcccggtgagcgtggagctgctggt
accccaggacccaagggagagaagggagaggctggacacagaggccctgatggaaacccc
ggaagagacggatctcgtggtctccctggacctcctggtcctcctggacccaccggagcc
aatggagataagggtgagagtggatcctttggacctgctggccctgccggacctcgtgga
ccccctggagagcgtggagaggttggacctgctggtggccctggatttgctggtccccct
ggtagtgatggtcagcccggagcaagaggagagcgtggacctgctggaggaaagggagaa
gctggccccagtggtccttctggtcccgctggacagtctggacctgctggtccctctggc
cccgctggaccccctggtgcccgtggagagactggtcccgctggtgctactggtttgcct
ggtgctgctggcagagttggtgctcctggccctgctggtattgttggacctcctggcttc
actggtcccgctggcaaagatggaccccgtggtctccgtggtgatcctggtcccgctggt
ccttctggagagcagggattggttggaccagctggtccagctggagagaagggaccttct
ggcgagcctggccccgctggacctcctggtgctcctggaacctctggccctcttggactt
cagggattcattggcctgcctggtgctagaggagatcgtggtgctcctggtggtgctggt
gctgtgggagagcccggtagagttggaccccctggtcccgctggagcacgtggccccgct
ggcaacattggcatgcctggtatgaccggacctcagggagaggctggacgtgagggcagc
cctggtaatgatggaccccctggccgtcctggcatrcctggattcaagggagaccgtggt
gagcctggatcagctggttccgctggagttggaggtgcccctggacctgctggacccact
ggagctgctggcagacctggaaaccgtggagagcctggcccatcaggacccactggaccc
gctggacctgctggagctagaggtgcccctggacctgctggaccccgtggtgagaaggga
gttgctggagacaggggagatagaggcatgaagggtctgcgtggacatcctggtctccag
ggaatgcctggaccmtctggacctcctggagacaccggatctgctggagcagttggacat
gctggacccagaggacctgctggacccaatggaccccctggtaaggatggtagagctggt
ggccatggatctatgggatctcctggtgctcgtggacctccaggatactctggaccagtg
ggtcctgctggacctcccggtccacctggacctcccggcccatcaggtggtggatatgat
gtctctggatacgatgagtacagagccgatcagcctgctctgagagctaaggactatgaa
gttgatgccaccatcaagtcactcaacactcagatcgacaacctgctcactcctgaggga
tccaggaagaaccctgcacgtacctgccgtgacatcaaactcagccaccccgactggagc
agtggattctactggattgaccccaaccagggatgtatcaatgatgccatcaaggtcttc
tgcgactttactacccgtgagacctgcatctacgcccaccccgagagcatrgcacagaag
aactggtacagaagcacagagaccaagaagcacgtgtggttcggagagaccatcaacggt
ggtaccgagtttacctacaacgacgagaccctcagcccacagagcatggccacacagctg
gctttcatgcgcctgctttccaaccaggccagccagaacatcacctaccactgcaagaac
agcattgcctacatggatggtgagagcggcaacctgaagaaggctgtggtgctccagggc
tccaargacgtggagctcagggccgagggcaacagccgcttcaccttctctgtgctggag
gatggctgcacgacacacactggtgaatggagcaagacagtgattgagtacagaacaaat
aaaccaactcgcctgcccatcctcgacattgcacctttggacattggtggagctgatcag
gagttcggtttggacattggcccagtctgtttcaaataa
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